Plant FIBer expression Database

Lus10013953 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34040 737 / 0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
AT1G29030 720 / 0 Apoptosis inhibitory protein 5 (API5) (.1)
AT3G19515 217 / 2e-61 unknown protein
AT1G23935 167 / 3e-44 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005277
[exp]
1000 / 0 AT2G34040 763 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Lus10025428
[exp]
801 / 0 AT2G34040 769 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G062500
[exp]
790 / 0 AT2G34040 782 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Potri.004G052300
[exp]
782 / 0 AT2G34040 787 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF05918 API5 Apoptosis inhibitory protein 5 (API5)
Representative CDS sequence
>Lus10013953 pacid=23170131 polypeptide=Lus10013953 locus=Lus10013953.g ID=Lus10013953.BGIv1.0 annot-version=v1.0
ATGAGCGACCTACTGGACGAGGAATCCAAGCACATCGAGAATCTCTACGAGTACGGAGAGCGGCTGAACGAGGCCAAGGACAAGTCTCAGAATGTTGCTG
ATTATCAAGGCATTATTGATGCTGCTAAAAGTAGTGTGAAGGCAAAGCAGCTGGCAGCACAGCTCATCCCGCGCTTCTTCAAGTTCTTCCCTCAGCTCTC
TAGCCAGGCCGTCGACGCTCATCTGGATTTGATTGAGGAAGAAGACATTCGGGTGAGGGTACAAGCAATTAGAGGCCTGCCACTATTCTGCAAGGACACG
CCTGGGATTTTGATCAAGATTGTAGACATTCCTGTTCAACTCCTTGGAACAGATGAAGCCGTGGAGAGGGATGCAGTGCATAAGGCCCTCATGTCCTTGT
TGAGGCAGGATGTTAAAGTTTGTCTAACTGCATTATTCAAACACGTTGTCACTCCGGAGCAAATTGGCACTCCTGATGAACCAAGCTTAGAGGAAGTGTT
CCGTCGCAAAGTTCTTAGTTTCATTAGGGATAAGGTGTTCCCCCTCAAATCTGAACTCCTGAGGCCTCAGGAGGAGATGGAACGGTATATTACTGATTTG
ATAAAAAAGAATTTAGAAGATGTGACTGGTACTGAATTCAAGATGTTTATGGACTTCTTGAAGAGTTTGAGCATATTTGGGGAAAAAACCCCTCCTGAGC
GAACAAAAGAACTAGTTGAAATAATTGAAGAACAGGCTGATTTACATGCACAGTTCAGTGTTGAAGATACAGATCATATTGACAGATTAATATCATGCCT
GTATATGGCCCTTCCTTTCTTCTTGAGAGGAGCATCCTGCAGCAAATTCCTCAACTACTTGAACAACAACATAATTCCTGTTTTTGATCAGGTTCCTGAA
GATCGGAAACTCGATATGCTCAAAGCGCTGGCGGAAATTTCTCCCTACACAGCCTCTCAAGAGTCGCGCCAAATTCTTCCTTCTGTTGTTCAACTCTTGA
AGAAATACATGCCGCTGAAGAAGACCGGGGAAGAGACAAACTTTACCTATGTCGAGTGCTTATTATATGCTTTTCATCATTTGGCTAGCAAGGCTCCCAA
TGCCACGAATGGTTTATGCGGTTACAAGATAGTAACTGGCCAGCCATCAGATAGACTTGGCGAGGACTTCTCTGAACTCTACAAGGATTTTATCGAGAGG
TTGACTAATGTGGAAGACCTTACTAAGGCAACAATGAAAAAATTAACACAGGGAATGACAGAGCATCATAAACCAACATTAGCAGCGAAATCAGATGAAG
CGAAAGAAGCAATCAAAGCCCAGAAACAGAACGCCACCACTGGATTAAGGACCTGCAATAACATTTTGGCAATGTCAAAGCCTTTGCATGCAAAAACGCC
ATCATTTATCCGTGACAAGAGCATCGTTCTTTCCTGGAAAGAAGCATCAAAGCCTTCCGTGCCATCCAATACTGCAACAACTGGAGCCAAACGACCTTCA
TCAGCTGCTAATGGATCAGGGAACGTAGCGAAGAAGGGACGTGGCGGTGGTGGTGCACAGAACCAACTCGTTAATCGGGCATTTGAAGGCATAGGGAGAG
GAGGCGGTCATCCAAGGGGTAGGGGAAGAGGCAGAGGAGGGTGGGGTGGACTTGGAAGAGGCCGAGGTTTTCGCTAG
AA sequence
>Lus10013953 pacid=23170131 polypeptide=Lus10013953 locus=Lus10013953.g ID=Lus10013953.BGIv1.0 annot-version=v1.0
MSDLLDEESKHIENLYEYGERLNEAKDKSQNVADYQGIIDAAKSSVKAKQLAAQLIPRFFKFFPQLSSQAVDAHLDLIEEEDIRVRVQAIRGLPLFCKDT
PGILIKIVDIPVQLLGTDEAVERDAVHKALMSLLRQDVKVCLTALFKHVVTPEQIGTPDEPSLEEVFRRKVLSFIRDKVFPLKSELLRPQEEMERYITDL
IKKNLEDVTGTEFKMFMDFLKSLSIFGEKTPPERTKELVEIIEEQADLHAQFSVEDTDHIDRLISCLYMALPFFLRGASCSKFLNYLNNNIIPVFDQVPE
DRKLDMLKALAEISPYTASQESRQILPSVVQLLKKYMPLKKTGEETNFTYVECLLYAFHHLASKAPNATNGLCGYKIVTGQPSDRLGEDFSELYKDFIER
LTNVEDLTKATMKKLTQGMTEHHKPTLAAKSDEAKEAIKAQKQNATTGLRTCNNILAMSKPLHAKTPSFIRDKSIVLSWKEASKPSVPSNTATTGAKRPS
SAANGSGNVAKKGRGGGGAQNQLVNRAFEGIGRGGGHPRGRGRGRGGWGGLGRGRGFR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G34040 Apoptosis inhibitory protein 5... Lus10013953
[exp]
0 1
AT4G25240 SKS1 SKU5 similar 1 (.1) Lus10031143
[exp]
1.0 0.9089
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Lus10030269
[exp]
7.5 0.8817
AT2G33840 Tyrosyl-tRNA synthetase, class... Lus10029613
[exp]
8.5 0.8068
AT5G05830 RING/FYVE/PHD zinc finger supe... Lus10017197
[exp]
9.6 0.7975
AT2G29680 CDC6, ATCDC6 cell division control 6 (.1.2) Lus10011627
[exp]
11.7 0.8404
AT3G60660 unknown protein Lus10010359
[exp]
11.8 0.8762
AT5G66750 CHR01, CHA1, SO... SOMNIFEROUS 1, DECREASED DNA M... Lus10041735
[exp]
15.0 0.8910
AT5G64630 MUB3.9, NFB1, N... FASCIATA 2, Transducin/WD40 re... Lus10020888
[exp]
16.0 0.8458
AT5G59160 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, ty... Lus10004989
[exp]
24.3 0.7911
AT5G01910 unknown protein Lus10022734
[exp]
27.1 0.8669

Lus10013953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.