Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34050 333 / 2e-116 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020428 [exp] 451 / 4e-163 AT2G34050 335 / 3e-117 unknown protein Lus10007055 [exp] 389 / 6e-139 AT2G34050 316 / 2e-110 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052200 [exp] 369 / 7e-131 AT2G34050 348 / 2e-122 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06644 [flax] [poplar] ATP11 ATP11 protein
Representative CDS sequence Show only first row Show all	>Lus10013954 pacid=23170078 polypeptide=Lus10013954 locus=Lus10013954.g ID=Lus10013954.BGIv1.0 annot-version=v1.0 ATGCGACTGCCGTTATTTCGAAGGATATTGAGAACCTCGGAATTTTCTGTAAAATTCCTTCTTCAACCGAACAGCACTTTCACCTCCCGATCACTGAATT CGAGTCTCGGAAAACTGACCAGAAGAGGAGAAGGTATTACGGGGGATTTCGCCAAATGGACATCGTTACAGTTTGTGAGGACTTCAAGCTTTGCATCTGG GTTCACTCCTTTGCAGCCGAAGTCATTGGAGTCAATCATAGATGTTGAACGGGCCAAGCATAAATCACCCGAGGATCTCGCTTCCGCCTGGGACGATTAT CACATTGGGAGAGGTCACATTGGAGTAACCATGAAGGCCAACCTTTATAATTTGCTTAAGCAAAGAGCAGCAGATTGCAAGTACTTTGTTATCCCTTTGT GGAGAGGATCTGGTTACACTACAATGTTTGCACAAGTGCAAATGCCGCACATTATCTTCACCGGTCTCGAGGACTACAAGTCGAGGGGAACTCAGGCATC TCCATACATCACCGTCTCCTTTTACACCGAATTTGCTGAGAGTAAAGACTTGGTTCTCATTCGAGGAGACATCGTCTTTACCAGCAAACTCAGCGACGAA GAGGCACAATGGCTGCTAGAGACGGCTCAGTCTTTCTATCTGAACGACTCGAGGTACAAGCTGGTTGAACGGTTCAACAAGCAGACCAGTGATTTCGAGT TCAAGGACGTCCTTCAGGCACTGAATATGCCCATCATGTGA
AA sequence Show only first row Show all	>Lus10013954 pacid=23170078 polypeptide=Lus10013954 locus=Lus10013954.g ID=Lus10013954.BGIv1.0 annot-version=v1.0 MRLPLFRRILRTSEFSVKFLLQPNSTFTSRSLNSSLGKLTRRGEGITGDFAKWTSLQFVRTSSFASGFTPLQPKSLESIIDVERAKHKSPEDLASAWDDY HIGRGHIGVTMKANLYNLLKQRAADCKYFVIPLWRGSGYTTMFAQVQMPHIIFTGLEDYKSRGTQASPYITVSFYTEFAESKDLVLIRGDIVFTSKLSDE EAQWLLETAQSFYLNDSRYKLVERFNKQTSDFEFKDVLQALNMPIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34050			unknown protein		Lus10013954 [exp]	0	1
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	1.7	0.8873
					Lus10028086 [exp]	5.0	0.8424
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	5.1	0.8766
AT1G03180			unknown protein		Lus10000654 [exp]	7.3	0.8293
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	7.5	0.8337
AT1G50575			Putative lysine decarboxylase ...		Lus10016588 [exp]	8.8	0.8247
AT1G07830			ribosomal protein L29 family p...		Lus10024720 [exp]	9.2	0.8403
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	9.6	0.8699
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10027015 [exp]	11.5	0.8251
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10018612 [exp]	17.5	0.8670

Compare expression of checked genes

Lus10013954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.