Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34060 448 / 2e-157 Peroxidase superfamily protein (.1) AT5G14130 289 / 4e-95 Peroxidase superfamily protein (.1) AT5G67400 266 / 3e-86 RHS19 root hair specific 19 (.1) AT2G18980 265 / 6e-86 Peroxidase superfamily protein (.1) AT4G37520 260 / 5e-84 Peroxidase superfamily protein (.1.2) AT4G37530 259 / 9e-84 Peroxidase superfamily protein (.1.2) AT4G17690 255 / 6e-82 Peroxidase superfamily protein (.1) AT5G40150 255 / 7e-82 Peroxidase superfamily protein (.1) AT5G47000 254 / 1e-81 Peroxidase superfamily protein (.1) AT1G24110 253 / 3e-81 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005278 [exp] 622 / 0 AT2G34060 441 / 3e-152 Peroxidase superfamily protein (.1) Lus10012540 [exp] 264 / 2e-85 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10039445 [exp] 261 / 2e-84 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10010716 [exp] 260 / 9e-84 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10001442 [exp] 259 / 3e-83 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10011079 [exp] 259 / 4e-83 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10032035 [exp] 252 / 1e-80 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10004234 [exp] 249 / 1e-79 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 248 / 6e-79 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052100 [exp] 496 / 2e-176 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.011G062300 [exp] 459 / 6e-161 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 315 / 4e-105 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.017G064100 [exp] 267 / 1e-86 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.018G089900 [exp] 265 / 6e-86 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.007G053400 [exp] 264 / 2e-85 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.001G329200 [exp] 263 / 3e-85 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.012G076500 [exp] 263 / 4e-85 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 262 / 6e-85 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 261 / 2e-84 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase CL0617 [flax] [poplar] PF02580 [flax] [poplar] Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase
Representative CDS sequence Show only first row Show all	>Lus10013955 pacid=23170116 polypeptide=Lus10013955 locus=Lus10013955.g ID=Lus10013955.BGIv1.0 annot-version=v1.0 ATGGCAATTCTTCCACATTCTCCATCCACTTTCCTCTACATTTCTCTTATCATTCTTCTCCTCCATCACATTTCCACAGCCACCGGCGCAGCCACTAACC GCCGGAGGCTACGTCAGCTCTCCGTCAACTATTACGCCAGGACATGTCCACATCTTGAGCAGCTGGTCGGCTCAGTCACTTCCCAGCAGTTCAAGGTGGC TCCGGTTTCTGGTCCCGCCACCATCCGCCTCTTCTTCCACGACTGCTTCGTCGAGGGATGCGACGGGTCAATTCTGATATCAACGAAGCCAGGAAGCAGA GAATTGGCAGAGAAGGAAGCAGAGGATAATAAGGACCTGAGAGCAGAAGGATACGACACCGTTTTCAAAGCCAAGTCCCTCGTTGAGACCAAGTGCCCCG GCGCCATCTCTTGCTCCGACATCCTCGCCATTGCCGCCCGTGACTATGTCCACTTAACAGGTGGACCATACTACCAAGTGAAGAAAGGAAGATTTGACGG GAAAACATCCAAGGCAACAAAAGTACCTGACAACATTCCACGGTCAAATTCGACCGTCGACGCCCTCCTTACCCTCTTCCGAACCAAAGGCCTGTCACTT CAAGACATGGTGGTCCTATCCGGAGCACATACGATTGGATTCGCACACTGCAAGCAATTCGTCACCAGGCTGTACGACTACAAGGGCACAAAAAACCCCG ACCCCACCCTGGACCCGAGGCTACTGAAGGAACTAAGAATTTCATGCCCTAGGGTCGGGTCGAATGATAAGGTAGTGGTGCCGTTCGATGTCACGACGCC GTTTAAGTTCGATCATGCTTACTACTTGAACTTGGAAGGGAAGTTGGGCCTGCTGGGCTCGGATCAGGGCCTGTGGATGGATCCGAGGACCAAGGGTGTG GTCCAGGAGATGGGGAGGGATAGAGGCAAGTTTTTTGGGATGTTTGGTTTGGCTATGGAGAAGATGGGGGAGATTGGTGTTAAGAGTGGGAGGAGACATG GTGAGATTAGGAGAGATTGTAGTATGGTAATGCAGAAGAACTATGGAGTTTTGCTAGTGAGTCAGTTTACATTGTATGTAATTATGAAGGGGAACAAGCC AGACTATCATGTAGCAATGCCACCCCAGAAAGCTAAGCCGTTCTACGAATCGCTAGTGGATAAGTTCAGGAAATCTTACAATCCTGACGCCATTAAAGAC GGTGTGTTTGGTCCGATGATGAAGGTTAATCTAATAAACGATGGTCCAGTTACGATGCAACTCGACTCGTCTCAACCCTGGAAGTGA
AA sequence Show only first row Show all	>Lus10013955 pacid=23170116 polypeptide=Lus10013955 locus=Lus10013955.g ID=Lus10013955.BGIv1.0 annot-version=v1.0 MAILPHSPSTFLYISLIILLLHHISTATGAATNRRRLRQLSVNYYARTCPHLEQLVGSVTSQQFKVAPVSGPATIRLFFHDCFVEGCDGSILISTKPGSR ELAEKEAEDNKDLRAEGYDTVFKAKSLVETKCPGAISCSDILAIAARDYVHLTGGPYYQVKKGRFDGKTSKATKVPDNIPRSNSTVDALLTLFRTKGLSL QDMVVLSGAHTIGFAHCKQFVTRLYDYKGTKNPDPTLDPRLLKELRISCPRVGSNDKVVVPFDVTTPFKFDHAYYLNLEGKLGLLGSDQGLWMDPRTKGV VQEMGRDRGKFFGMFGLAMEKMGEIGVKSGRRHGEIRRDCSMVMQKNYGVLLVSQFTLYVIMKGNKPDYHVAMPPQKAKPFYESLVDKFRKSYNPDAIKD GVFGPMMKVNLINDGPVTMQLDSSQPWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34060			Peroxidase superfamily protein...		Lus10013955 [exp]	0	1
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026920 [exp]	2.2	0.8991
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	4.5	0.8516
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10022469 [exp]	9.7	0.8424
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	9.8	0.8574
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	12.4	0.8696
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	12.6	0.8612
AT2G18410			unknown protein		Lus10009164 [exp]	15.6	0.8286
AT3G56870			unknown protein		Lus10018851 [exp]	17.3	0.8493
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	31.8	0.8494
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	33.6	0.8579

Compare expression of checked genes

Lus10013955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.