Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45950 381 / 5e-132 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 249 / 4e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 243 / 8e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 241 / 7e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45960 239 / 6e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 229 / 3e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 228 / 6e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 227 / 2e-71 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75890 225 / 8e-71 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G14820 223 / 6e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005279 [exp] 642 / 0 AT5G45950 427 / 4e-150 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 252 / 3e-81 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 243 / 8e-78 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 239 / 4e-76 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 238 / 4e-76 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015162 [exp] 237 / 2e-75 AT2G04570 482 / 5e-172 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031520 [exp] 237 / 1e-74 AT2G04570 473 / 3e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006856 [exp] 233 / 1e-73 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 232 / 2e-73 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G051900 [exp] 481 / 2e-171 AT5G45950 430 / 3e-151 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 254 / 9e-82 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 246 / 5e-79 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 242 / 1e-77 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 233 / 2e-73 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 230 / 9e-73 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 228 / 1e-71 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 226 / 4e-71 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 225 / 1e-70 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 224 / 3e-70 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10013956 pacid=23170118 polypeptide=Lus10013956 locus=Lus10013956.g ID=Lus10013956.BGIv1.0 annot-version=v1.0 ATGTCGTCTAAGGTTGCAATGTCTGCAGGCTTGCCCATTTTGGCGGTGGTGGTGGTGCTGATGGCGGCGTTGGCGTCGGCGGCGGAGATTAGCCTCATTA AGACGCTGGCTGCCAAGTACAACGTGACGAGTGTGTTGGTGTTTGGAGACTCGAGTGTCGACCCTGGAAACAACAACCAGTTGCATACTCCGATGAAGGG CAACTTCCCTCCTTATGGCAAAGATTTCTTCCACGGCCGCCCCACCGGCCGGTTCAGCAACGGCCGGCTTGCCACCGACTTCATTGCTGAGGCAATCGGA TATACAAAGATCATCCCAGCATTTCTGGACCCACGTCTCAAGCCAGCAGACATACTCCACGGCGTCAGCTTCGCATCGGCCGCTTCCGGATACGACGAAC TCACCGCCAATTTCTCGAAAGTACTGTCGATGCGTAAGCAGCTGGACTACTTGATGCACTACAAGCTCCACCTCAGCAGGCTCGTCGGACCCGCAAAGGC CGACGAGATCGTCAAGAACGCCGTGTTCGTTCTCAGCATGGGAACCAACGACTTCCTCCAGAACTACTTCCTCGAGCCCGACCGTTCCAAGCAGTTCACC GTCGTCCAGTATCAGGAATTCTTGTCCTCTCAGATGCTCCACAATGTCAAAGAAATGCACAGGCTGGGACTTCGGAGATTGGTCGTGGTGGGGGTCCCAC CGCTCGGATGCATGCCACTTGTCAAGACGCTCAACGGCCAGGATGAAACCTGCGTGGAATCCTATAACCACGTGTCCGCCACGTTCAACGCCAAGGTCAA AGCGAATCTCGCCCTTCTCCGTCGCACACTCGGAATCAAAGATGCTTACGTGGACTGCTTCGGTGTCATCCAGAACGCCGTCAAAGACCCCAAATCCTAC GGATTTGTGGAGGTGAAGAAGGGCTGTTGTGGGACTGGGACCATCGAATACGGCGACACGTGTAAAGGGCTGGCCACGTGCGAGGACGCGTCGAAATATG CGTTTTGGGATGCGGTCCACCCGAGCCAGAAGATGTACGAGTTGATTGCTGACGAAGCGATGCAGTCCATCTCTGCATCAATGTTCTCATAA
AA sequence Show only first row Show all	>Lus10013956 pacid=23170118 polypeptide=Lus10013956 locus=Lus10013956.g ID=Lus10013956.BGIv1.0 annot-version=v1.0 MSSKVAMSAGLPILAVVVVLMAALASAAEISLIKTLAAKYNVTSVLVFGDSSVDPGNNNQLHTPMKGNFPPYGKDFFHGRPTGRFSNGRLATDFIAEAIG YTKIIPAFLDPRLKPADILHGVSFASAASGYDELTANFSKVLSMRKQLDYLMHYKLHLSRLVGPAKADEIVKNAVFVLSMGTNDFLQNYFLEPDRSKQFT VVQYQEFLSSQMLHNVKEMHRLGLRRLVVVGVPPLGCMPLVKTLNGQDETCVESYNHVSATFNAKVKANLALLRRTLGIKDAYVDCFGVIQNAVKDPKSY GFVEVKKGCCGTGTIEYGDTCKGLATCEDASKYAFWDAVHPSQKMYELIADEAMQSISASMFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	0	1
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	1.0	0.9644
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	1.4	0.9491
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	2.0	0.9338
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	3.2	0.8857
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	3.9	0.9408
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	4.2	0.9074
AT4G20160			unknown protein		Lus10036249 [exp]	5.3	0.9018
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10015712 [exp]	5.8	0.8746
					Lus10022823 [exp]	6.0	0.8870
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10024375 [exp]	6.7	0.8790

Compare expression of checked genes

Lus10013956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.