Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45960 331 / 3e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 223 / 2e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 216 / 2e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G31540 211 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 211 / 4e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30310 210 / 5e-66 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G06990 208 / 2e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58430 207 / 8e-65 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G24560 205 / 3e-64 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G30220 202 / 3e-63 GDSL-like Lipase/Acylhydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005280 [exp] 550 / 0 AT5G45960 371 / 4e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 224 / 1e-71 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 199 / 8e-62 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 192 / 5e-59 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 191 / 8e-59 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003722 [exp] 190 / 2e-58 AT5G42170 298 / 3e-99 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003723 [exp] 189 / 3e-58 AT5G42170 308 / 1e-103 SGNH hydrolase-type esterase superfamily protein (.1) Lus10034541 [exp] 189 / 1e-57 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10026406 [exp] 187 / 8e-57 AT1G06990 350 / 4e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062000 [exp] 367 / 2e-127 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 360 / 1e-124 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 225 / 1e-71 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 216 / 2e-68 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 206 / 1e-64 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 204 / 6e-64 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.005G205100 [exp] 204 / 3e-63 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 195 / 2e-60 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 196 / 3e-60 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076600 [exp] 193 / 1e-59 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10013957 pacid=23170123 polypeptide=Lus10013957 locus=Lus10013957.g ID=Lus10013957.BGIv1.0 annot-version=v1.0 ATGACTAAATTCGCTTCCTACGTGGGAGTGAAAGAAAACGTGCCGCCCTACCTCGACCCGTCGCTCACCATCGAAGACCTCAAGACCGGAGTCACATTCG CATCGGCCGGCACCGGATTCGATCCCATGACCCCTCAAATCAGCAACGTGATACCGATTGATCAACAAGTGGTTTACTTCAAGGAGTACAAGAAAAAGCT CGAAGCTGCAATGGGGAAGCAGAGGACCGAAGAACACATTAGAAAATCGCTGGTCGTCATCAGCGCGGCCACCAACGACTTCGTTATCAGTTACTTCGCG CTGCCGGTTCGTCGCAAAAGCTTCACCATATCGGAGTACGAGAGGTTCATCCTCCAGAAATCGATGGACTTCGTCCAGGCATTGATAGATGAAGGAGTGA CAAGAATGCTACTAAGTGCATTAGCTCCAATGGGTTGTTTGCCGGTTGTTATTACTCTCTTCTCAAAGGACCCGATCTTCGACCGTCGATGTCTAGACCA GTATACGCAGGTGGCAATCGATTATAACCGTATGGTTCAAACCGAGTTGAACAGGATGAAACCTCAGCTCGATAGTCAGGGAGTCAAGATCTACATATCC GACGTTTATAACACTGTGAATGACATTATCCAACGGCCACAAGCCAACGGTTATGACGAAGTCAATGCCGGGTGTTGTGGGACCGGGATACTGGAAGTCG GGTTCTTGTGCAACCCACATTCGTTGGTGTGCCCCGATGCTTCGAAGTATGTGTTTTGGGATTCGATTCATCCGTCGGAGAGGACTTACCACAAAGTTTT TAAGGCTCTTCGTCCTACCGTTGATCTACTCATCAAGGATTGA
AA sequence Show only first row Show all	>Lus10013957 pacid=23170123 polypeptide=Lus10013957 locus=Lus10013957.g ID=Lus10013957.BGIv1.0 annot-version=v1.0 MTKFASYVGVKENVPPYLDPSLTIEDLKTGVTFASAGTGFDPMTPQISNVIPIDQQVVYFKEYKKKLEAAMGKQRTEEHIRKSLVVISAATNDFVISYFA LPVRRKSFTISEYERFILQKSMDFVQALIDEGVTRMLLSALAPMGCLPVVITLFSKDPIFDRRCLDQYTQVAIDYNRMVQTELNRMKPQLDSQGVKIYIS DVYNTVNDIIQRPQANGYDEVNAGCCGTGILEVGFLCNPHSLVCPDASKYVFWDSIHPSERTYHKVFKALRPTVDLLIKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10013957 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	2.8	0.8818
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	3.6	0.8912
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	6.7	0.8493
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	8.2	0.8412
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	10.2	0.8278
AT5G11420			Protein of unknown function, D...		Lus10008080 [exp]	15.6	0.7956
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10034877 [exp]	15.7	0.7514
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	16.1	0.8147
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	18.3	0.7964
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	19.6	0.8033

Compare expression of checked genes

Lus10013957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.