Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33880 170 / 2e-49 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT5G45980 110 / 2e-27 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT5G17810 68 / 8e-13 HD WOX12 WUSCHEL related homeobox 12 (.1.2) AT3G03660 68 / 1e-12 HD WOX11 WUSCHEL related homeobox 11 (.1.2) AT2G17950 52 / 2e-07 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT5G05770 49 / 3e-07 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT1G20700 50 / 6e-07 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT3G11260 48 / 2e-06 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT1G20710 47 / 3e-06 HD WOX13B, WOX10 WUSCHEL related homeobox 13B, WUSCHEL related homeobox 10 (.1) AT3G18010 48 / 4e-06 HD WOX1 WUSCHEL related homeobox 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005282 [exp] 536 / 0 AT5G45980 184 / 2e-54 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10023561 [exp] 50 / 8e-07 AT4G35550 201 / 3e-64 WUSCHEL related homeobox 13 (.1) Lus10040447 [exp] 49 / 2e-06 AT4G35550 203 / 4e-65 WUSCHEL related homeobox 13 (.1) Lus10040219 [exp] 49 / 2e-06 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10028271 [exp] 49 / 2e-06 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10042007 [exp] 49 / 3e-06 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10018011 [exp] 49 / 3e-06 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10028457 [exp] 47 / 1e-05 AT2G17950 146 / 3e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10041909 [exp] 47 / 1e-05 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G061400 [exp] 240 / 1e-76 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.004G051600 [exp] 234 / 7e-74 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.013G066900 [exp] 69 / 3e-13 AT3G03660 233 / 9e-77 WUSCHEL related homeobox 11 (.1.2) Potri.019G040800 [exp] 62 / 6e-11 AT3G03660 221 / 1e-71 WUSCHEL related homeobox 11 (.1.2) Potri.010G111400 [exp] 50 / 1e-06 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.012G047700 [exp] 49 / 2e-06 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.010G192100 [exp] 48 / 2e-06 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.015G039100 [exp] 49 / 3e-06 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.005G252800 [exp] 47 / 6e-06 AT4G35550 196 / 8e-63 WUSCHEL related homeobox 13 (.1) Potri.007G012100 [exp] 47 / 9e-06 AT2G17950 126 / 9e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10013960 pacid=23170068 polypeptide=Lus10013960 locus=Lus10013960.g ID=Lus10013960.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAAACAGACACTGGCCTAGCTTGTTCAAGTCCAAACCAGCTCCTTGTAACCCTCATCATCACCATTCATGGCAGCATGACGTCACTCCTC CTCCACCGACCCACCGTTCCAATTCCTCTTACAATCCTGTCAACCCTCCTCGCGACGAGATTCGAAAGATTCGAGTCCAACTTCAGGAGTTCGGCCAAGT AGGGGACGCCAACGTCTTCTACTGGTTCCAGAACCGCAAGTCTAGAAGCAAGCACAAGCTCCGCCACCTGCAACCTTCCAAAACGACGTCGCATCAGCCG CCGAATCCCCCCACAACCACAACCGATCTTTCCTCGTCGTCATCCTCGTCATCCGACAACTACAAGCCCTCCCCTCGATCTGCTGGCTCCAAGAGAACCC TCTCTTCCCGATCTGAACAAAACGGGGTCGTTTTGCTTGACCCTTCGACCAACACCCCCACTCATCAGCCTTCTTCATACGACTTCTTCTCTTCTGAGCC GGCACCGTTTTTCATGTCTGGTCAGCAGCCGGCCGGTTTTTCGTTATCGGAACCGGTTCCGGGTAATGTGGTCGGACCGTGTACTAGTCTTTTGCTCAGC GACATTCTGAATCTGAACCATCATAGGAAGTTGATGGATCAAGTCGAGGATGATGGCAGTAAGAAGTTGATGCTCGATCATCAACTCTGTTACCCGCACG AAACGAGTAACAACGATAATGCCGTGACCACCACATCTCCCATCGTCGGCGTTGCTTGTAACCCCGTCACCGCTCCTTTCCTTAGCCACATTCCAGCTGG TATGGGTAGTAGTACTGGAGATCATCATCATCACCACGAGTCGGAGCAGACGAATTCGTCGAAGATGACGGTGTTCATCAACGATGTGGCGTTCGAGGTC GGAACGGGTCCGTTTAACGTGAGGGAGTCGTTCGGGGATGACATTCTGTTGGTTCACTCGTCGGGGCAGCCGGTTCTGACCGATGACTGGGGAATTACTC TTCAGTCCCTTCACCATGGGGGTTTTTACTATTTGGTGCCATTTCCCACCACCGCACATCATATTTGA
AA sequence Show only first row Show all	>Lus10013960 pacid=23170068 polypeptide=Lus10013960 locus=Lus10013960.g ID=Lus10013960.BGIv1.0 annot-version=v1.0 MASSNRHWPSLFKSKPAPCNPHHHHSWQHDVTPPPPTHRSNSSYNPVNPPRDEIRKIRVQLQEFGQVGDANVFYWFQNRKSRSKHKLRHLQPSKTTSHQP PNPPTTTTDLSSSSSSSSDNYKPSPRSAGSKRTLSSRSEQNGVVLLDPSTNTPTHQPSSYDFFSSEPAPFFMSGQQPAGFSLSEPVPGNVVGPCTSLLLS DILNLNHHRKLMDQVEDDGSKKLMLDHQLCYPHETSNNDNAVTTTSPIVGVACNPVTAPFLSHIPAGMGSSTGDHHHHHESEQTNSSKMTVFINDVAFEV GTGPFNVRESFGDDILLVHSSGQPVLTDDWGITLQSLHHGGFYYLVPFPTTAHHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	0	1
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	1.0	0.9991
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	1.7	0.9981
					Lus10021217 [exp]	2.0	0.9982
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	3.0	0.9918
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	3.5	0.9967
					Lus10026293 [exp]	3.9	0.9966
					Lus10041871 [exp]	4.9	0.9920
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	4.9	0.9894
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	4.9	0.9951
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	6.5	0.9923

Compare expression of checked genes

Lus10013960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.