Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61110 224 / 4e-71 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G01720 213 / 5e-67 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04070 213 / 2e-66 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT5G08790 211 / 2e-66 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G69490 207 / 2e-65 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G15510 209 / 1e-64 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT4G27410 201 / 1e-62 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G77450 200 / 1e-62 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G52890 199 / 1e-61 NAC ANAC019 NAC domain containing protein 19 (.1) AT1G52880 199 / 2e-61 NAC ATNAM, NAM, ANAC018, NARS2 NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015389 [exp] 629 / 0 AT1G61110 223 / 6e-71 NAC domain containing protein 25 (.1) Lus10006547 [exp] 233 / 1e-73 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10003269 [exp] 232 / 2e-73 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10036117 [exp] 228 / 5e-72 AT3G15510 241 / 2e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10037156 [exp] 226 / 5e-72 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10043095 [exp] 227 / 2e-71 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10011215 [exp] 226 / 2e-71 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10032657 [exp] 226 / 3e-71 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10018469 [exp] 226 / 3e-71 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049500 [exp] 273 / 4e-90 AT1G61110 232 / 4e-74 NAC domain containing protein 25 (.1) Potri.011G058600 [exp] 268 / 6e-88 AT3G15510 227 / 6e-72 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.001G404400 [exp] 229 / 2e-72 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.004G038000 [exp] 226 / 9e-72 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G046700 [exp] 226 / 1e-71 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.011G123500 [exp] 225 / 4e-71 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.013G054000 [exp] 218 / 5e-68 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.019G031400 [exp] 217 / 9e-68 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.005G180200 [exp] 213 / 2e-67 AT1G01720 392 / 9e-139 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G081000 [exp] 213 / 5e-67 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10013964 pacid=23170110 polypeptide=Lus10013964 locus=Lus10013964.g ID=Lus10013964.BGIv1.0 annot-version=v1.0 ATGCTGAAACCATCACTCCCTCCAGGTTTCAGGTTTCACCCAACAGACCAAGAGCTTTTGATCTATTACCTCAAGCAGAAGATCACTTCTTCATCTTCTC CGCCGTCGGTCGATAACTGCTCCGACCAAGTCTCCCTCATCGCCGACATCAACATCTACAAGTTCGATCCATGGGACCTCCCAAATATGGCGATGTTTGG AGAGAACGAGTGGTTCTTCTTCAGCCCACGTGATCGAAAGTACCCGAACGGAGCTCGACCCAACCGGACAGCTGCCTCCGGTTACTGGAAAGCCACCGGG ACCGATAAGCCTATACTATCCACCAATGGAACCTCCCATTGCCTTGGAGTCAAGAAGGCTCTTGTGTTTTACCAAGGCAAACCTCCCAAGGGAATCAAGA CCAATTGGATGATGCTCGAGTATCGCCTTCTCGATCGCTCTACCCAAATTCGTACTCTCAAACGATCTATGCGCTTGGACGATTTTGTACTGTGCCGAGT GAGGCTGAAGACCAACACCAACGGCCTACAATATCCAAGAGAGGAGATTAGTTTCATCAACTGTCCGCCACGAGGTTTGACTATGACCGAAACGATGTCG TTTAAGGATGATGTCAAGGCCACGTTGGCAGCCAGCGTGGACGGCTACGTGGGTTACGATTTTCAAGCATGTCTAGCGTCTCTAGGCAACGACGCCGACG ATGCTGACGTGGAAGGGTCGACGTGTAACGAGCAACAAGTGTCTCCAAGCTACTCGATCTCCAACGGTACTACTATTATGGATCATCATAGGAACCCTGA AACGAAGCCGTCTGGAGCGGCGGGGTCCAGCTCCGACGCTTTGGAGTTCTACGCCATCCGAAAAGCGATGTCGTTTGGAGGAGATTTTGAGGGTATCGAT ACGACCCCGTCGAAGAAGATGAGGTTGTTCGAAGAAGATGAAGATACGGTTTTGAGCAGCGGGGATAATGATTTCCAGGCTTCAATTTGCCCCACGGTTA ATTCTAGGCCTATTCAAGGATATTATATCTGA
AA sequence Show only first row Show all	>Lus10013964 pacid=23170110 polypeptide=Lus10013964 locus=Lus10013964.g ID=Lus10013964.BGIv1.0 annot-version=v1.0 MLKPSLPPGFRFHPTDQELLIYYLKQKITSSSSPPSVDNCSDQVSLIADINIYKFDPWDLPNMAMFGENEWFFFSPRDRKYPNGARPNRTAASGYWKATG TDKPILSTNGTSHCLGVKKALVFYQGKPPKGIKTNWMMLEYRLLDRSTQIRTLKRSMRLDDFVLCRVRLKTNTNGLQYPREEISFINCPPRGLTMTETMS FKDDVKATLAASVDGYVGYDFQACLASLGNDADDADVEGSTCNEQQVSPSYSISNGTTIMDHHRNPETKPSGAAGSSSDALEFYAIRKAMSFGGDFEGID TTPSKKMRLFEEDEDTVLSSGDNDFQASICPTVNSRPIQGYYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	2.6	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	3.7	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	4.6	1.0000
					Lus10024141 [exp]	5.3	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	5.9	1.0000
					Lus10013255 [exp]	6.5	1.0000
					Lus10013259 [exp]	7.0	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	8.0	1.0000
					Lus10028570 [exp]	8.5	1.0000
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10029435 [exp]	8.9	1.0000

Compare expression of checked genes

Lus10013964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.