Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14650 518 / 5e-175 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) AT1G14640 443 / 2e-146 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G06520 118 / 2e-27 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G12280 102 / 7e-23 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2) AT4G16200 99 / 1e-22 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G06890 58 / 9e-11 Ubiquitin-like superfamily protein (.1) AT3G49130 59 / 3e-09 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1) AT2G43960 53 / 3e-07 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G55100 51 / 2e-06 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) AT1G18050 49 / 4e-06 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007278 [exp] 518 / 3e-178 AT1G14650 512 / 3e-174 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10035958 [exp] 514 / 2e-173 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10025704 [exp] 401 / 2e-136 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10025705 [exp] 395 / 1e-132 AT1G14650 365 / 5e-120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015391 [exp] 177 / 8e-53 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10043105 [exp] 50 / 4e-06 AT5G55100 504 / 1e-165 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10032646 [exp] 49 / 1e-05 AT5G55100 499 / 3e-164 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070700 [exp] 590 / 0 AT1G14650 810 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.005G094600 [exp] 577 / 0 AT1G14650 814 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.001G356800 [exp] 51 / 3e-06 AT5G55100 420 / 6e-133 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Potri.001G269900 [exp] 43 / 0.0006 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.009G064600 [exp] 43 / 0.0008 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0072 [flax] [poplar] PF12230 [flax] [poplar] PRP21_like_P Pre-mRNA splicing factor PRP21 like protein CL0072 [flax] [poplar] PF01805 [flax] [poplar] Surp Surp module
Representative CDS sequence Show only first row Show all	>Lus10013966 pacid=23170112 polypeptide=Lus10013966 locus=Lus10013966.g ID=Lus10013966.BGIv1.0 annot-version=v1.0 ATGCCAGGCACAGCAATTTTGTCTCTGCAAGCACCTCCTCCTCACTCAGAAGGAGCTCCGGTTGCTACCCACACCAGAACCATTGGAATTATACATCCTC CTCCAGGTATCCGGAATATTGTTGACAAAACCGCACAGTTTGTTGCCGAAAAGGGACCCGAGTTTGAGAAAACGATTATGGATCGTACTGCCAAAAATGA TAACTTCAAGTTTTTGAATCCCAACGATCCGTATCATGCGTATTATCAACATCTTTTGTCCGAGTCTCGCACCCAGAATCTGTCTTCTATGCAACAGCCT GCTGATGATGATGGAAGCGAAGCAGCTCCAAAGCCTGACCCTGCTGCCCAATTTAGACTACCAACTCGAAAGGTTTTTGAACCACCTGAATCAGAGCAGT ATACAGTTCGGATTCCTGAAGGGATTACTGGAGAAGAACGTGATATTATTAAGGTGACTGCACAGTTTGTAGCGCGAAATGGGAAAACATTCCTTACTGG GCTCACTAATAGGGAGATGAACAACCCCCAGTTCCACTTTATGATGCCAACCCACAGCATGTTTACTTTCTTCACAGGGCTTGCAGATGCCTATTCAAAA GTCCTGATGCCTCCAAAAGGTTTAACAGAGAAGTTGACGAACAGTGTTGCTGACATGACCGCTGTGCTTGAGAGATGCGTGACTCTTGAGGAGGTCACAA GGAGAAGCAAGGTAATGGCTATGGAGGAAGACGAAATTGTTGAACCGGGGAAGGAGGTTGAAATGGAAATGGATGAAGAGGAGGTGAAGCTTGTTGAAGA AGGCATGAGAGCATCGAACATTGATGAGAAGAATGCTTTGAACGCTAATGAGGAACCTGAACAACCAATTAGAATTGTGAAGAACTGGAAGAGACCTGAG GAGAGGCTGCCAGCTGAAAGAGATCCTGCAAAGTTTGTTGTTTCCCCAATTACTAGAGAGCTGATTCCTATTCATGAAATGTCAGAACACATGAGGATTT CCCTAATTGATCCCAAGTACAAGGAGCAAAAGGAGAGGATGTTTGCCAAGATTCGGGAGACCATTCTTGCTGGCGATGATGAAATTTCGAAAAATATTGT GGGCCTTGCACGAACCCGTCCTGATATCTTTGGCACAACAGAGGAGGAGGTGTCTAATGCCGTTCAAGCTGAAATTGTGAAAAAGAAAGATGAGCAACCA AAGCAGGTCATATGGGATGGCCACACTGGAAGCATTGGGCGGAATTCTAACCAGGCAATGTCCCAAAGTCTTGGTGACGACGATCAAAATAAGGCTACGA ACAGTGACCGACAAAACTTACTTCGACCAGCTGCTCCTCCTCACTGTCCTGGTGTACCATCACTTCTACCGCTGGCTCCGAATGCAGTCTCATATTCAAC TTCTATGGGTGGTGGATATCCTGTCCCTCTGCCAACGCCACCGGGTATGCCATTGATGCCATCAATTCGTCCACCACCGATGATGATGATGAATCAACTT TCGTCTACGAATCCACCAAACATGCCAGTACCACCTCCATCAGGGTCTCAGTTTTCTCTCATGCCAATGCACCGTCCTTTCGCCCCTGTGCCTATGTCTA TGCCTCCACCACACATGCACGCTATGGCCCCTCCTCCACTTCCAGAAGAACCTGAGCCAAAGAGGCAGAAGCTAGATGATTCAATGCTCATTCCAGAAGA GCAGTTTTTGGCCCAGCATCATGGACCTGCAAGCATCAATGTTACTGTTCCAAGTGTCGATGAAGGAAATCTAAGAGGTCAAGTGCTGGAGATTAGAGTA GAATCCTTGTCAGAAACAATTCTCAGTGTGAAGGAGAAGATTGCTGGAGAGATTCAACTTGCTTCCAATAAGCAGAAATTGATGAGTCAAAAGGCTCGTT TTCTCAAGGATAATATGAGCCTTGCTTACTACAATCTCCGCGGTGGAGATTCACTTACTTTGACGTTGAGAGAGCGTGGTGGGAGAAAGAAATAA
AA sequence Show only first row Show all	>Lus10013966 pacid=23170112 polypeptide=Lus10013966 locus=Lus10013966.g ID=Lus10013966.BGIv1.0 annot-version=v1.0 MPGTAILSLQAPPPHSEGAPVATHTRTIGIIHPPPGIRNIVDKTAQFVAEKGPEFEKTIMDRTAKNDNFKFLNPNDPYHAYYQHLLSESRTQNLSSMQQP ADDDGSEAAPKPDPAAQFRLPTRKVFEPPESEQYTVRIPEGITGEERDIIKVTAQFVARNGKTFLTGLTNREMNNPQFHFMMPTHSMFTFFTGLADAYSK VLMPPKGLTEKLTNSVADMTAVLERCVTLEEVTRRSKVMAMEEDEIVEPGKEVEMEMDEEEVKLVEEGMRASNIDEKNALNANEEPEQPIRIVKNWKRPE ERLPAERDPAKFVVSPITRELIPIHEMSEHMRISLIDPKYKEQKERMFAKIRETILAGDDEISKNIVGLARTRPDIFGTTEEEVSNAVQAEIVKKKDEQP KQVIWDGHTGSIGRNSNQAMSQSLGDDDQNKATNSDRQNLLRPAAPPHCPGVPSLLPLAPNAVSYSTSMGGGYPVPLPTPPGMPLMPSIRPPPMMMMNQL SSTNPPNMPVPPPSGSQFSLMPMHRPFAPVPMSMPPPHMHAMAPPPLPEEPEPKRQKLDDSMLIPEEQFLAQHHGPASINVTVPSVDEGNLRGQVLEIRV ESLSETILSVKEKIAGEIQLASNKQKLMSQKARFLKDNMSLAYYNLRGGDSLTLTLRERGGRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	0	1
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022886 [exp]	4.9	0.8027
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	9.7	0.7998
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10040111 [exp]	10.2	0.7237
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031325 [exp]	10.4	0.7782
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	12.2	0.8057
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	16.6	0.7868
AT3G15000			cobalt ion binding (.1)		Lus10014696 [exp]	19.5	0.7750
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	24.9	0.7923
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	34.0	0.7824
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031898 [exp]	34.9	0.7648

Compare expression of checked genes

Lus10013966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.