Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28500 316 / 1e-107 NAC ANAC073, SND2, NST7 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) AT1G28470 312 / 5e-106 NAC ANA010, ANAC010, SND3, NST8 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, NAC domain containing protein 10 (.1) AT4G29230 291 / 4e-95 NAC ANAC075, NST9 NAC domain containing protein 75 (.1) AT5G56620 266 / 4e-87 NAC ANAC099 NAC domain containing protein 99 (.1) AT1G25580 216 / 7e-67 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G14490 173 / 3e-51 NAC ANAC085 NAC domain containing protein 85 (.1) AT3G01600 165 / 5e-48 NAC ANAC044 NAC domain containing protein 44 (.1) AT3G04060 81 / 7e-17 NAC ANAC046 NAC domain containing protein 46 (.1) AT5G18270 80 / 7e-17 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT1G33060 73 / 5e-14 NAC ANAC014 NAC 014 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015392 [exp] 490 / 1e-176 AT4G28500 308 / 2e-105 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10039873 [exp] 309 / 1e-104 AT4G28500 355 / 5e-123 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10018637 [exp] 304 / 6e-103 AT4G28500 350 / 2e-121 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10034999 [exp] 280 / 2e-90 AT4G29230 388 / 3e-130 NAC domain containing protein 75 (.1) Lus10012927 [exp] 273 / 4e-89 AT4G29230 346 / 3e-115 NAC domain containing protein 75 (.1) Lus10021708 [exp] 228 / 4e-71 AT1G25580 462 / 4e-161 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10041492 [exp] 216 / 6e-67 AT1G25580 486 / 7e-171 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10003668 [exp] 197 / 3e-59 AT5G14490 273 / 2e-88 NAC domain containing protein 85 (.1) Lus10026879 [exp] 77 / 1e-15 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058400 [exp] 363 / 3e-125 AT4G28500 344 / 4e-118 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.004G049300 [exp] 361 / 3e-125 AT4G28500 353 / 1e-122 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.017G016700 [exp] 347 / 4e-120 AT4G28500 344 / 4e-119 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.007G135300 [exp] 328 / 3e-112 AT4G28500 337 / 3e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.018G068700 [exp] 285 / 1e-93 AT4G29230 511 / 2e-179 NAC domain containing protein 75 (.1) Potri.006G152700 [exp] 284 / 4e-93 AT4G29230 489 / 9e-171 NAC domain containing protein 75 (.1) Potri.010G129700 [exp] 235 / 2e-74 AT1G25580 476 / 5e-167 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.008G116600 [exp] 234 / 7e-74 AT1G25580 509 / 4e-180 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G343800 [exp] 214 / 2e-66 AT3G01600 266 / 5e-86 NAC domain containing protein 44 (.1) Potri.019G031600 [exp] 77 / 1e-15 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10013967 pacid=23170060 polypeptide=Lus10013967 locus=Lus10013967.g ID=Lus10013967.BGIv1.0 annot-version=v1.0 ATGACGACGTGGTGCAATAATGATAACACATCCGCCACCGCCGCAACATCGGGCGGCGGCGATGTCGTCCGGTTAGCTGACGAGTTTCCCGCTGTTTCCA GGTGTCCTTCATGTGGCCACGTCATGGATTCGTCCTCCGCGTTCCAAGATCAGGGTGGCGGCGGCGGCGGAGGTATACAGGATTTGCCGGGGCTGCCAGC TGGCATGAAGTTTGATCCGACGGACCAGGAGATACTAGGACATCTAGAGGCGAAAGTATTGTCTGATCCACGTAAAGTTCACCCTATGATCGACGAGTTC ATCCCAACCATCGACGGTGAAAATGGGATCTGCTACACTCATCCCGAGAAGCTACCGGGAGTGAGCAACGACGGCCAAGTGAGGCACTTCTTCCACAGGC CATCAAAGGCATACACGACGGGGACAAGGAAGAGGAGGAAGGTCCACACCGACGAGCAAGACGGGAGTGAGACGAGATGGCACAAGACGGGCAAGACCAG GCCGATCCTGGTGGATCGCGAGACGGTCAAAGGGTTCAAGAAGATCCTAGTCCTCTACACCAACTACGGGAGGCAAAGGAAGCCAGAGAAGACCAATTGG GTGATGCACCAATACCACCTTGGCAACAATGAAGAGGAGAAAGATGGCGAGTTGGTCGTCTCCAAAGTGTTCTACCAAACACAACCTAGACAATGTGGTG GTGGTGGTGGTGGTGGTGGTTCTAGCTCAGTGAGCATCAAGGAAGTAACTAGTGGTGGTAATAGTAATGTGACTCCTAACCTAGTTGATTACTACGGCTC AACTTTTGTGTCCTTTGAGCATAGTGAAGGGAGCCAAGTTAATAGAGAGAGCTCACCTCATCATCAACATCATCATCATCATCATCATGGGTTGATGATG ATTCCTAGTTTGGTTGGATCTTCCTATACTCGACTTGCTGATGATGCAAGCAAAGGATCATCAAAGGAACTGAAGTGA
AA sequence Show only first row Show all	>Lus10013967 pacid=23170060 polypeptide=Lus10013967 locus=Lus10013967.g ID=Lus10013967.BGIv1.0 annot-version=v1.0 MTTWCNNDNTSATAATSGGGDVVRLADEFPAVSRCPSCGHVMDSSSAFQDQGGGGGGGIQDLPGLPAGMKFDPTDQEILGHLEAKVLSDPRKVHPMIDEF IPTIDGENGICYTHPEKLPGVSNDGQVRHFFHRPSKAYTTGTRKRRKVHTDEQDGSETRWHKTGKTRPILVDRETVKGFKKILVLYTNYGRQRKPEKTNW VMHQYHLGNNEEEKDGELVVSKVFYQTQPRQCGGGGGGGGSSSVSIKEVTSGGNSNVTPNLVDYYGSTFVSFEHSEGSQVNRESSPHHQHHHHHHHGLMM IPSLVGSSYTRLADDASKGSSKELK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10013967 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10015392 [exp]	1.7	0.9673
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	1.7	0.9744
AT1G07120			unknown protein		Lus10031863 [exp]	2.4	0.9589
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	3.2	0.9715
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	3.5	0.9636
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	4.9	0.9522
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	10.0	0.9621
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	11.8	0.9489
AT5G42710			unknown protein		Lus10010807 [exp]	14.1	0.9471
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	15.0	0.9495

Compare expression of checked genes

Lus10013967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.