Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28440 1251 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 941 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 685 / 0 HSL2 HAESA-like 2 (.1) AT5G65700 625 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G09970 611 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 609 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 606 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G72180 573 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 570 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 565 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015393 [exp] 1724 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 1073 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 883 / 0 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 634 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10005491 [exp] 626 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10028232 [exp] 626 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10006028 [exp] 604 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019248 [exp] 596 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 584 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049100 [exp] 1319 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 1288 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 1066 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 1062 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.006G235800 [exp] 659 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 644 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G106800 [exp] 641 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.007G009200 [exp] 615 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 608 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.018G088200 [exp] 601 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013968 pacid=23170043 polypeptide=Lus10013968 locus=Lus10013968.g ID=Lus10013968.BGIv1.0 annot-version=v1.0 ATGCATCATTTACCCCTCTTCCACCTAGCCGCCGGCGTTCTCCTCCTCCTCCTCCTCCTTCCATCTCCATCAATCTCACTCACCCAAGAAGCACTAATCC TCCTTCAAGCCAAGCTCTCCTTCTCCGACCCGGATTCCTCCCTCTCCTCCTGGAACTCCTCCTCCGACCCTTCTTCCCCTTGCTCATGGAACCTGGTCAA ATGCGACCCGATTACCCGCTCCGTCACCTCCCTCGACTTCAACTCCGCCAACCTCGCCGGCCCATTTCCCACAATCCTCTGCCGCCTGCGCAGCCTCAAC TTCATCTCCTTCTTCAACAACGCCATTAACGGCACTCTGCCTCCGGAAATCTCCACCTGTAAGTCTCTGGTTCACCTCGATCTCTCTCAGAACTTCCTCA CCGGTACGATTCCGGATACTTTGCCTGACATTCCGAACTTGAAATACCTCGACCTCACTGGGAACAACTTCTCCGGCGAGATTCCTCCCTCGTTCGGCCG ATTCGAGCAGCTGGAGGTGTTCGCCGTGGTTTATAATCTTCTTGACGGGACCATCCCTCCGTTTTTGGGGAATATTTCGAGCTTGAGGATGCTGAATATG TCCTACAACCCGTTTCGGCCTGGTCGGATCCCGCCGGAGATTGGAAACTTGACGAATTTGGAAGTCCTCTGGCTGACGGAATGTAATCTTGTCGGTGAAA TCCCTTCGTCTTTGGGTCGGTTGAAGAAGCTAACCGATTTGGATTTGGCGATTAATGGTTTGGTCGGTGAGCTTCCGAGTTCACTCACTGAGTTGCCCAA TCTCGTCCAGTTGGAGCTCTACAACAACTCGTTGACCGGAGAGCTTCCGAATGGGATGGGGAACTTAACGGCGTTAAGACTCCTCGACGCGTCAATGAAT CAGTTAACGGGAACAATCCCAGACGGTTTATGTCAGCTTCCGTTAGAAAGTCTCAATCTTTACGAAAACCAATTGGAAGGTGATTTGCCGGCGAGCATTG GTTCTTCCCGGAACTTATACGAGCTGAGATTATTCGGCAACAAACTCACCGGCGAGCTACCGCAAAACCTCGGCAGAAACTCGCCGCTGAGATGGGTCGA CGTCTCCAACAATCTCTTCACCGGTCCACTCCCGCCGGCGCTCTGTTCAAAGGGGGAACTTGAGGAGCTTCTCGCGATATACAACTCCATCTCCGGCGCG CTACCGGGGGGTTTATCCGAGTGCCGCAGCCTGACCCGGATTCGATTAGGCTACAACAAGCTATCCGGCGAAATACCGGTCAATTTCTGGGGGTTGCCTC ACGTTTCTCTGGTCGATCTCGTCAGCAACTCCTTCTCCGGCGAAATCGCGAAGACCATCGCCGGCGCATCCAACTTATCGATGCTGATTCTGGATAAGAA CGGGTTCACCGGTCCGATTCCGGAGGAAATCGGGTGGGTCGGCAGTCTGGTGGAGTTCTCCGCTAACGGAAATAATCTCAGCGGCGGCTTACCGGGTAGC TTGGTGAATCTGAAGCAATTGGGGAAACTGGATCTCCACGGCAATCAAATCTCCGGTGAGATTCCTTCCGGAATCGACTCATGGAAGAAGCTGAACGAGC TCAATTTAGGAGAGAATCGATTTTCCGGCGAAATCCCTAGCTCAATCGGGAAACTCTCCGTTCTCAACTACCTCGATTTATCGGGAAACAATCTCGCCGG CGAAATCCCGGCGAGTCTACAGAACTTGAAGCTAAACCAGCTCAATTTATCCAACAACAAACTCTCCGGCGAAATTCCACCCCTTTACGCTAAGGAGACT TACAAGAACAGTTTTTTAGGGAATCCCGGGTTATGCGGCGAGATTCCCGGATTATGCGCCGGCAAAGGAAGAAGAAACAACAGAGGGGAGGATTACGCAT GGCTATTGAGATCAATGTTTATACTTGCAGCAGTCGTGTTTGTAGTAGGAGTCGTTTGGTTCTATGTCAAATACAAGAACATCCAGGAGGTTACGAAATC GGCAGCAGGAGTGATCGACAAGTCGAAATGGACGTTGATGTCGTTCCACAAGCTGGGATTCAGCGAGTATGAGATTCTCGACGCTTTAGACGAGGACAAT GTGATAGGGTCCGGTTCGTCTGGCCGGGTTTACAAAGTTGTGCTGAGCAATGGGGAAATGGTGGCTGTGAAGAAGCTATGGGGATCAGGTGGCTTGATGA ACAAGGAATTATTCGAGAATGGCGGGGATGGGTTCGATGCTGAGGTGAGGACGTTGGGGAAGATTCGGCATAAGAACATAGTGAAGCTGTGGTGCTGCTG TGTGACTAAGGACTGTAAGCTTCTGGTTTATGAGTATATGGTTAATGGGAGCTTGGGGGATTTGCTTCATGGTAGCAAGTCTGGGTTGCTGGATTGGCCT ACTAGGTTCAAGATCATACTTGATGCTGCGGAAGGGATGTCGTACTTGCATCATGATTGCGTTCCTCCGATTGTTCATCGGGATGTTAAGTCGAATAACA TCTTGCTGGATGGCGAGTTCGGTGCTAGGGTTGCGGATTTCGGACTGGCTAAGGTCGTCGATTCTTCCGCCGGGAAGCCTAAGTCCATGTCTGTTATTGC TGGTTCATGTGGCTACATTGCTCCAGAGTACGCATACACGCTACGAGTCAACGAGAAGAGCGACATCTACAGCTTCGGAGTCGTGGTACTCGAGCTAGTA ACGGGGAGGCTCCCCGTGGATCCGGAGTTCGGGGAGAAGGACCTAGTGAAGTGGGTACGGACCACAATCGACCAGAAGGGAGTGGACCACATCCTGGACA CGAAACTCGACTCGTGTTTCAAGGAAGAGATATGCAGGGTCCTCAACATAGGGATAATATGCACGAGCCACCTCCCGATCAACCGGCCCTCGATGAGGAG GGTGGTGAAGATGCTCCAGGAGATCGGCGGCGATGCTCGAGAGAAGGCCGCCGCCGCAATGCAGGACAGCAAGTTGACTCCTTATTACTATGAAGATGGG TCTGATCATGGGAGTGTAGTTTGA
AA sequence Show only first row Show all	>Lus10013968 pacid=23170043 polypeptide=Lus10013968 locus=Lus10013968.g ID=Lus10013968.BGIv1.0 annot-version=v1.0 MHHLPLFHLAAGVLLLLLLLPSPSISLTQEALILLQAKLSFSDPDSSLSSWNSSSDPSSPCSWNLVKCDPITRSVTSLDFNSANLAGPFPTILCRLRSLN FISFFNNAINGTLPPEISTCKSLVHLDLSQNFLTGTIPDTLPDIPNLKYLDLTGNNFSGEIPPSFGRFEQLEVFAVVYNLLDGTIPPFLGNISSLRMLNM SYNPFRPGRIPPEIGNLTNLEVLWLTECNLVGEIPSSLGRLKKLTDLDLAINGLVGELPSSLTELPNLVQLELYNNSLTGELPNGMGNLTALRLLDASMN QLTGTIPDGLCQLPLESLNLYENQLEGDLPASIGSSRNLYELRLFGNKLTGELPQNLGRNSPLRWVDVSNNLFTGPLPPALCSKGELEELLAIYNSISGA LPGGLSECRSLTRIRLGYNKLSGEIPVNFWGLPHVSLVDLVSNSFSGEIAKTIAGASNLSMLILDKNGFTGPIPEEIGWVGSLVEFSANGNNLSGGLPGS LVNLKQLGKLDLHGNQISGEIPSGIDSWKKLNELNLGENRFSGEIPSSIGKLSVLNYLDLSGNNLAGEIPASLQNLKLNQLNLSNNKLSGEIPPLYAKET YKNSFLGNPGLCGEIPGLCAGKGRRNNRGEDYAWLLRSMFILAAVVFVVGVVWFYVKYKNIQEVTKSAAGVIDKSKWTLMSFHKLGFSEYEILDALDEDN VIGSGSSGRVYKVVLSNGEMVAVKKLWGSGGLMNKELFENGGDGFDAEVRTLGKIRHKNIVKLWCCCVTKDCKLLVYEYMVNGSLGDLLHGSKSGLLDWP TRFKIILDAAEGMSYLHHDCVPPIVHRDVKSNNILLDGEFGARVADFGLAKVVDSSAGKPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVVLELV TGRLPVDPEFGEKDLVKWVRTTIDQKGVDHILDTKLDSCFKEEICRVLNIGIICTSHLPINRPSMRRVVKMLQEIGGDAREKAAAAMQDSKLTPYYYEDG SDHGSVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10013968 [exp]	0	1
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10015393 [exp]	1.0	0.9627
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	2.0	0.9324
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	7.7	0.8839
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	8.7	0.8938
AT4G11950			Protein of unknown function (D...		Lus10024479 [exp]	11.5	0.9048
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	13.2	0.8490
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	15.1	0.8979
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	15.2	0.8583
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	18.0	0.8565
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	19.0	0.8598

Compare expression of checked genes

Lus10013968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.