Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18425 214 / 1e-70 Protein of unknown function (DUF679) (.1) AT5G46090 211 / 1e-69 Protein of unknown function (DUF679) (.1) AT4G24310 149 / 3e-45 Protein of unknown function (DUF679) (.1) AT3G02430 142 / 3e-42 Protein of unknown function (DUF679) (.1) AT3G21550 137 / 8e-41 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT1G09157 128 / 9e-37 Protein of unknown function (DUF679) (.1) AT5G39650 125 / 1e-35 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT3G21520 124 / 1e-35 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT5G27370 101 / 9e-27 Protein of unknown function (DUF679) (.1) AT4G28485 0 / 1 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015395 [exp] 412 / 7e-149 AT4G18425 218 / 3e-72 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 222 / 1e-73 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 222 / 2e-73 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 192 / 8e-62 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 187 / 8e-60 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 184 / 2e-58 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 179 / 1e-56 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10033645 [exp] 164 / 4e-51 AT5G46090 208 / 2e-68 Protein of unknown function (DUF679) (.1) Lus10017689 [exp] 164 / 6e-51 AT5G46090 197 / 8e-64 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058000 [exp] 231 / 2e-77 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 230 / 1e-76 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 211 / 7e-70 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 144 / 5e-43 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 140 / 5e-42 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.008G115100 [exp] 134 / 1e-39 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.008G087000 [exp] 134 / 4e-39 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 132 / 4e-38 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 129 / 3e-37 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 111 / 2e-30 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10013970 pacid=23170023 polypeptide=Lus10013970 locus=Lus10013970.g ID=Lus10013970.BGIv1.0 annot-version=v1.0 ATGAAGGGCTCTCAACATCAAGACGAACGTCTGCTTTTCGACGATGAATCTCTTCCGGAGACACTGCAGACGAGAATAATACACAAAGTCATCGGCAAGA CATGTCAGACGACACAGGACTTGGCAAAGCACTTACCGACCGGAACAGTTCTCGTGTTCCAGCTTATGTCGTCCACTGTCACGAGAGAAGGTAACTGCGA CGACTCGGTGGCACTATACTTGACTGCCACGCTCGTGGCAGTCTGCGGATTATCATGTTTTCTTTTGTGCTTCACCGACAGCTTCAGGGACAAGAACGGT GTAGTTTGTTACGGGATTGTCACATTTCGAGGCATATGGGTCATTGACACAACGGTTGCTGAGATTCCACCGAAATTTGCAGAAAAGTACAGGTTGCAGT TGATTGATTTTGTGCATGGCTTCATGTCTGTGCTTGTGTTTGCAGTAGTCGTTCTGTTTGATAAGAATATGGTGCAGTGCTTTTGGCCAGCACCAACCGA TCAGATCCAGAAGCTTCTCACGGCATTGCCCATTATGATCAGTGGGATCTGCGCCACCTTGTTTGCAGTTTTCCCCACCAAACGCCATGGAATCGGATTC CCCCTATCTGCAAATTGA
AA sequence Show only first row Show all	>Lus10013970 pacid=23170023 polypeptide=Lus10013970 locus=Lus10013970.g ID=Lus10013970.BGIv1.0 annot-version=v1.0 MKGSQHQDERLLFDDESLPETLQTRIIHKVIGKTCQTTQDLAKHLPTGTVLVFQLMSSTVTREGNCDDSVALYLTATLVAVCGLSCFLLCFTDSFRDKNG VVCYGIVTFRGIWVIDTTVAEIPPKFAEKYRLQLIDFVHGFMSVLVFAVVVLFDKNMVQCFWPAPTDQIQKLLTALPIMISGICATLFAVFPTKRHGIGF PLSAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18425			Protein of unknown function (D...		Lus10013970 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	1.7	0.8109
AT3G47570			Leucine-rich repeat protein ki...		Lus10009394 [exp]	4.0	0.7483
AT3G47570			Leucine-rich repeat protein ki...		Lus10033362 [exp]	4.6	0.7515
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Lus10029908 [exp]	5.9	0.7416
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	6.8	0.7901
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	13.4	0.7210
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	14.3	0.7137
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	15.8	0.7323
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10040454 [exp]	15.9	0.7081
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	16.0	0.7456

Compare expression of checked genes

Lus10013970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.