Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46090 235 / 1e-78 Protein of unknown function (DUF679) (.1) AT4G18425 233 / 6e-78 Protein of unknown function (DUF679) (.1) AT4G24310 186 / 4e-59 Protein of unknown function (DUF679) (.1) AT3G02430 186 / 4e-59 Protein of unknown function (DUF679) (.1) AT3G21550 144 / 2e-43 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT3G21520 140 / 1e-41 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT5G39650 136 / 3e-39 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT1G09157 132 / 5e-38 Protein of unknown function (DUF679) (.1) AT5G27370 115 / 4e-32 Protein of unknown function (DUF679) (.1) AT4G28485 104 / 4e-28 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015396 [exp] 449 / 6e-163 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 331 / 5e-116 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 313 / 4e-109 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 295 / 1e-101 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 295 / 1e-101 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 204 / 3e-66 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 190 / 1e-60 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1) Lus10015395 [exp] 177 / 9e-56 AT4G18425 218 / 3e-72 Protein of unknown function (DUF679) (.1) Lus10017689 [exp] 177 / 1e-55 AT5G46090 197 / 8e-64 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049000 [exp] 267 / 9e-91 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 261 / 6e-89 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 206 / 2e-67 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 193 / 1e-61 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 168 / 6e-52 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 152 / 3e-46 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 148 / 6e-45 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.008G087000 [exp] 142 / 6e-42 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 142 / 8e-42 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.008G115100 [exp] 140 / 8e-42 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10013971 pacid=23170121 polypeptide=Lus10013971 locus=Lus10013971.g ID=Lus10013971.BGIv1.0 annot-version=v1.0 ATGGAAACATTGGGGTCAGCAGGTAATACAATGGAGATAAAAGTAGTAGAGAAAGAAGAAAGAACTACCTCCAGCTGCAATGACAGCAACAACAGTAAAA GCCTCCTCACAGCAGTCCCCAACAGCAAAAGCAAAACAGCGATTCAGCAAGCTATCAACCAGACGTTCAAGAGCACAGCTCACCTGGCCAACCTTTTGCC AACTGGGACGGTTCTGGCGTTCCACCTTCTGGCACCTGTGTTCTCCAACGAGGGCAAATGTGTTTCCACCGGAAGGTACATGACCATGGGGCTCATGGCC CTTTGTGCGCTGTCCTGTATTCTATCAAGCTTCACTGACAGTTTCACGGACAAGGATGGTGTAGTGTCCTACGGATTCGCAACGTTGAATGGACTATGGA TTATTGATGGCCCGGGAACCCTTCCTCCTGAACATGCAGGGGCTTACAGGCTAAGGTGTTTAGACTTCCTGCATGCCTTGACGTCGCTGCTTTTATTTGT AGCTGTTGCTCTGTTCGATGACAATGTGGTCAATTGCTTCTACCCATCGCCGTCTGAGGAGACTCAGCAGATCCTTAATGCTCTTCCCGTTGGGATTGGA GTTATTTGCAGTATGTTGTTTGGACTATTCCCCAGCAAACGACACGGGATTGGTTTCCTTTCTCGGCCAGCTGAAACTACTGTGCCTGTAACACCATGA
AA sequence Show only first row Show all	>Lus10013971 pacid=23170121 polypeptide=Lus10013971 locus=Lus10013971.g ID=Lus10013971.BGIv1.0 annot-version=v1.0 METLGSAGNTMEIKVVEKEERTTSSCNDSNNSKSLLTAVPNSKSKTAIQQAINQTFKSTAHLANLLPTGTVLAFHLLAPVFSNEGKCVSTGRYMTMGLMA LCALSCILSSFTDSFTDKDGVVSYGFATLNGLWIIDGPGTLPPEHAGAYRLRCLDFLHALTSLLLFVAVALFDDNVVNCFYPSPSEETQQILNALPVGIG VICSMLFGLFPSKRHGIGFLSRPAETTVPVTP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	0	1
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10016365 [exp]	3.5	0.8183
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10003838 [exp]	4.2	0.8040
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10010732 [exp]	5.0	0.8084
					Lus10021139 [exp]	5.2	0.8490
AT5G19875			unknown protein		Lus10006311 [exp]	9.3	0.8439
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	10.1	0.8245
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10005204 [exp]	10.4	0.7290
AT5G35870			unknown protein		Lus10001176 [exp]	13.3	0.6859
					Lus10003885 [exp]	14.9	0.6176
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	17.3	0.7828

Compare expression of checked genes

Lus10013971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.