Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46100 519 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 198 / 5e-57 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 178 / 3e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 171 / 3e-47 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 171 / 9e-47 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 164 / 3e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 163 / 5e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62680 158 / 6e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 159 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 157 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015397 [exp] 793 / 0 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 193 / 4e-55 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 187 / 1e-52 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 182 / 1e-50 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 182 / 1e-50 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 175 / 4e-48 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 169 / 4e-47 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 166 / 8e-45 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 161 / 6e-43 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057900 [exp] 584 / 0 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 197 / 1e-56 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 191 / 5e-54 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 181 / 2e-51 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G148700 [exp] 180 / 3e-50 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G103600 [exp] 176 / 6e-50 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 174 / 3e-48 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 172 / 5e-47 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 166 / 2e-46 AT4G01400 576 / 0.0 unknown protein Potri.006G242200 [exp] 166 / 2e-45 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013972 pacid=23170050 polypeptide=Lus10013972 locus=Lus10013972.g ID=Lus10013972.BGIv1.0 annot-version=v1.0 ATGGCAGCAAAGGCAATGTTCAAATGGTCGAAAAAGCTCACCACGTCACAAGTTCAGCAGCTGATACGAGCGGAGAAGGACGTCCACAAGGCATTGCGCA TATTTGATTCGGCTACAGCAGAGTACAGCAATGGCTACAAGCACGATCACTCCACGTTCCACATAATGATCTCCAAGTTACTGTCTGTCAACCAGTTCAA GCCAGCGGAGGAGATGTTGAAGAGGATGAAGACGGAGAATTGCGAGATAACGGAAGAGATTCTCCTCTCCGTTTGCAGGGCGTATGGTCGGGTTCACAGG TCGGTTGACGCCGTCAGGGTTTTCCGTGCGATGGAGGAAGAATATGGATGTAAGCCAACGGAAAGATCGTTCATTACTGTGCTTTCCGTGCTGGTGGATG AGTCCCAGCTGAAGGAAGCGTTTGGGTTTTATAGATACATGAAGGAGAGGGGTATTCGGCCAAGTGTTGTTTCTCTCAATATTTTGATGAAGGCACTTTG TAAGAACGGTGACACTGTGGATGCTGCTTTGAAGATATTCCTCGAGATGCCGAGTCGTGGATGTGTCCCTGATTTGTATACTTACGGCACGCTCATTAAT GGGCTGTGTAAATGGGGACGGATTTCTGAAGCGAAGGATTTGTTCCAAGAGATGGAGGGGAAAGGTTGTTCGCCATCTGTTGTTACGTACACTTCTTTGA TACACGGGTTGTGCCAGTCTGAGAAGGTAGATGAAGCCATGGAATTATTTGAAAAGATGAAAAGCAAAGGGGTAGATCCAAATGTGTTTGGGAAACTGCC CGAGGCTGTGGAACTTCTTGACAGAATGAAGCTTCAGGGCTTGAAACCAGACGCTGGACTTTATGGGAGGGTCATAATCGAGTTCTCCGCTTCGAGAAGA TTTCAGGAAGCTGCTAACTTCCTTGATGAAATGGTTCTTGGAGGAGTAAAACCAAGTCGTTTGACTTGGAGCCTTCATGTTAGGATGAATAATATGGTAG TGAAAGGCCTTGGTGCAAACGGGGACCTAAATCGAGCGTTTAGGTTGTACTTAAGCATGAGGACCAGAGGAATATCAGTTGAAGTAGAGACTTCCCATGA ACTTGCAAAGATTTTTGTTGAGAAAGGAGATCTTCAGAAAGCTGCTCACGTTGTAGATGGTTTGGTGGCTGATGGTTGTGTTCCAGATGAAGGATTGTGG AACATAATGATGGGTGGGTTCTGGGATCGAAGAAAGGCACGTGAAGCTTTTGAGTCGTTACATCGATAA
AA sequence Show only first row Show all	>Lus10013972 pacid=23170050 polypeptide=Lus10013972 locus=Lus10013972.g ID=Lus10013972.BGIv1.0 annot-version=v1.0 MAAKAMFKWSKKLTTSQVQQLIRAEKDVHKALRIFDSATAEYSNGYKHDHSTFHIMISKLLSVNQFKPAEEMLKRMKTENCEITEEILLSVCRAYGRVHR SVDAVRVFRAMEEEYGCKPTERSFITVLSVLVDESQLKEAFGFYRYMKERGIRPSVVSLNILMKALCKNGDTVDAALKIFLEMPSRGCVPDLYTYGTLIN GLCKWGRISEAKDLFQEMEGKGCSPSVVTYTSLIHGLCQSEKVDEAMELFEKMKSKGVDPNVFGKLPEAVELLDRMKLQGLKPDAGLYGRVIIEFSASRR FQEAANFLDEMVLGGVKPSRLTWSLHVRMNNMVVKGLGANGDLNRAFRLYLSMRTRGISVEVETSHELAKIFVEKGDLQKAAHVVDGLVADGCVPDEGLW NIMMGGFWDRRKAREAFESLHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	0	1
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014027 [exp]	3.5	0.8949
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	4.5	0.8785
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	5.5	0.8936
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	5.9	0.8758
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	6.9	0.8909
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10015308 [exp]	8.1	0.8581
AT5G23300		PYRD	pyrimidine d (.1)		Lus10041623 [exp]	9.5	0.7973
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	10.2	0.8665
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	15.2	0.8660
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	21.8	0.8552

Compare expression of checked genes

Lus10013972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.