Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18425 238 / 8e-80 Protein of unknown function (DUF679) (.1) AT5G46090 235 / 1e-78 Protein of unknown function (DUF679) (.1) AT3G02430 184 / 2e-58 Protein of unknown function (DUF679) (.1) AT4G24310 176 / 2e-55 Protein of unknown function (DUF679) (.1) AT3G21550 142 / 2e-42 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT5G39650 132 / 8e-38 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT1G09157 128 / 2e-36 Protein of unknown function (DUF679) (.1) AT3G21520 127 / 3e-36 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT5G27370 111 / 2e-30 Protein of unknown function (DUF679) (.1) AT4G28485 104 / 6e-28 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013975 [exp] 373 / 1e-132 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 313 / 3e-109 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 309 / 2e-107 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 284 / 1e-97 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 280 / 4e-96 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 193 / 4e-62 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 177 / 1e-55 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1) Lus10033645 [exp] 176 / 3e-55 AT5G46090 208 / 2e-68 Protein of unknown function (DUF679) (.1) Lus10017689 [exp] 174 / 1e-54 AT5G46090 197 / 8e-64 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049000 [exp] 276 / 1e-94 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 275 / 2e-94 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 197 / 7e-64 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 187 / 1e-59 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 168 / 3e-52 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.008G087000 [exp] 159 / 2e-48 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 152 / 1e-45 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 145 / 8e-44 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.013G027200 [exp] 143 / 1e-42 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.008G115100 [exp] 133 / 4e-39 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10013974 pacid=23170113 polypeptide=Lus10013974 locus=Lus10013974.g ID=Lus10013974.BGIv1.0 annot-version=v1.0 ATGGAGATCAAGGTAGTAGAGAAAGAAGATAGGGGACTTACCTCCACTTGCAATGGCATCAACAAGGAGGAAGAAGAACAAACTCCATGCCCTTTGCTCT CGGCAGCTCCATGCAATAAGGACGACAACAAAAATGCGGTGCAGCAAGCCATCACTCAGACGTTCAAGAGCACGGCTCACCTTGCCAACCTTTTGCCCAC CGGGACGGTTCTCGCTTTCCAGCTCCTGTCGCCCGTTTTCTCGAACCAGGGCCATTGTGATTCCACTAGCAGGGTCATAACCACAGCCTTGGTGGTCCTT TGCACCATATCCTGCATTCTTTCGAGCTTCACAGACAGTTTCACGAACAAGAATGGCACAGTGTCCTACGGGTTCGCGACGTGTAACGGGCTATGGGTCA TTGACGGCTCGTGCACCGTCCCCCCTGAGCTTGCTGGAGCATACAGCCTGAGGTGTATAGACTTTGCGCACGCTTTGATGTCGATGCTTCTATTCACAGC GGTTGCTCTGCTCGACAACAATGTGGTGAATTGCTTCTACCCGACACCTTCCACGGGGATTCAGGAGATGCTCTCTTCTGTACCAATCGGGGTTGGAGTC ATTTGCAGTATGTTGTTTGTTTTGTTCCCTACTAAACGTCACGGGATTGGTTTCCTCTCTCGCCCAGCTAGCGATACTACACCATGTGTGTAA
AA sequence Show only first row Show all	>Lus10013974 pacid=23170113 polypeptide=Lus10013974 locus=Lus10013974.g ID=Lus10013974.BGIv1.0 annot-version=v1.0 MEIKVVEKEDRGLTSTCNGINKEEEEQTPCPLLSAAPCNKDDNKNAVQQAITQTFKSTAHLANLLPTGTVLAFQLLSPVFSNQGHCDSTSRVITTALVVL CTISCILSSFTDSFTNKNGTVSYGFATCNGLWVIDGSCTVPPELAGAYSLRCIDFAHALMSMLLFTAVALLDNNVVNCFYPTPSTGIQEMLSSVPIGVGV ICSMLFVLFPTKRHGIGFLSRPASDTTPCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18425			Protein of unknown function (D...		Lus10013974 [exp]	0	1
					Lus10042299 [exp]	1.4	0.8524
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10020124 [exp]	6.5	0.7392
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	7.5	0.7448
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10008909 [exp]	10.5	0.7411
AT1G72200			RING/U-box superfamily protein...		Lus10036466 [exp]	11.2	0.7487
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10002836 [exp]	16.5	0.7506
					Lus10021851 [exp]	21.8	0.7358
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	23.3	0.7358
					Lus10008791 [exp]	24.7	0.7358
					Lus10012440 [exp]	26.1	0.7358

Compare expression of checked genes

Lus10013974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.