Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18425 258 / 2e-87 Protein of unknown function (DUF679) (.1) AT5G46090 252 / 5e-85 Protein of unknown function (DUF679) (.1) AT3G02430 199 / 4e-64 Protein of unknown function (DUF679) (.1) AT4G24310 186 / 5e-59 Protein of unknown function (DUF679) (.1) AT3G21550 144 / 3e-43 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT5G39650 140 / 5e-41 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT1G09157 137 / 1e-39 Protein of unknown function (DUF679) (.1) AT3G21520 134 / 5e-39 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT5G27370 112 / 7e-31 Protein of unknown function (DUF679) (.1) AT4G28485 110 / 3e-30 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013974 [exp] 374 / 9e-133 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 332 / 3e-116 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 330 / 2e-115 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 303 / 7e-105 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 298 / 4e-103 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 198 / 8e-64 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 189 / 5e-60 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1) Lus10015395 [exp] 184 / 2e-58 AT4G18425 218 / 3e-72 Protein of unknown function (DUF679) (.1) Lus10013970 [exp] 180 / 8e-57 AT4G18425 214 / 1e-70 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G049000 [exp] 291 / 3e-100 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 290 / 4e-100 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 216 / 5e-71 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 196 / 1e-62 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 180 / 1e-56 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.008G087000 [exp] 159 / 4e-48 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 155 / 9e-47 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 153 / 1e-46 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.013G027200 [exp] 148 / 2e-44 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.008G115100 [exp] 140 / 1e-41 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10013975 pacid=23170092 polypeptide=Lus10013975 locus=Lus10013975.g ID=Lus10013975.BGIv1.0 annot-version=v1.0 ATGGGAACTTTGAGTTCATCAGCAATCAAAACAATGGATATCAAGGTGGTAGAGAACAATGGAAGAGTTGTTACCTCCACCTGCAACAAGGAAGCAGAAG AAGAAACTTCACTTCCACTCCTCTCAGAAGTTCCCAGTAGCAATAAGGACGGCGACAACAAAACTGCGGTCCAGCAAGCCATCACCCAGACATTCAAGAG CACGGCTCACCTCGCCAACCTATTGCCCACCGGGACGGTTCTCGCTTTCCAGCTCCTCTCGCCTGTGTTCTCCAATCAGGGCCAATGTGATTCCGTTAGC AGGTTCATGACCACAACGTTTGTGGTCCTTTGCACCCTGTCCTGCATCCTTTCGAGCTTCACCGATAGTTTCACGGACAAGGATGGCTCGGTGTCCTACG GGTTTGCAACGTTTAAGGGGCTATGGGTCATAGACGGCTCGGGGACCCTGCCCCCTGAGCTTGCTGGAGCATACAAGCTGAGGTGCATAGACTTTGTGCA CGCTTTGATGTCGATGCTTTTATTTACAGCCGTTGCCCTGTTCGACGACAATGTGGTGAACTGCTTCTACCCAACACCTTCCACGGAGATTCAGGAGATC CTAACTTCTGTACCGGTTGGGATCGGAGTTTTTTGTAGTATGTTGTTTGTTTTGTTCCCTACTAAACGACATGGGATTGGTTTCCTCTCTCGCCCAGCTA GTGAGACTACACCGAGCATGTAA
AA sequence Show only first row Show all	>Lus10013975 pacid=23170092 polypeptide=Lus10013975 locus=Lus10013975.g ID=Lus10013975.BGIv1.0 annot-version=v1.0 MGTLSSSAIKTMDIKVVENNGRVVTSTCNKEAEEETSLPLLSEVPSSNKDGDNKTAVQQAITQTFKSTAHLANLLPTGTVLAFQLLSPVFSNQGQCDSVS RFMTTTFVVLCTLSCILSSFTDSFTDKDGSVSYGFATFKGLWVIDGSGTLPPELAGAYKLRCIDFVHALMSMLLFTAVALFDDNVVNCFYPTPSTEIQEI LTSVPVGIGVFCSMLFVLFPTKRHGIGFLSRPASETTPSM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18425			Protein of unknown function (D...		Lus10013975 [exp]	0	1
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	5.4	0.9234
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	9.4	0.9103
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	9.5	0.9091
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	10.8	0.9061
AT5G59010			Protein kinase protein with te...		Lus10040719 [exp]	16.7	0.8754
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	24.8	0.8991
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	25.0	0.8999
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	25.1	0.9045
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	26.0	0.9050
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10040320 [exp]	27.0	0.8310

Compare expression of checked genes

Lus10013975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.