Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 289 / 5e-84 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 287 / 2e-83 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 286 / 6e-83 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G32390 279 / 3e-81 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G24720 276 / 1e-79 ATGLR2.2 glutamate receptor 2.2 (.1) AT1G05200 276 / 2e-79 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT5G27100 271 / 4e-78 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G17260 268 / 1e-76 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT5G11210 260 / 2e-74 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT1G42540 261 / 3e-74 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 1140 / 0 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10005276 [exp] 592 / 0 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10026235 [exp] 303 / 7e-89 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10038670 [exp] 302 / 3e-87 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10003436 [exp] 295 / 5e-86 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039672 [exp] 290 / 8e-85 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 287 / 1e-83 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10016031 [exp] 285 / 9e-83 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10026553 [exp] 273 / 1e-78 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052500 [exp] 721 / 0 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052400 [exp] 714 / 0 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062900 [exp] 596 / 0 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.004G052600 [exp] 571 / 0 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062600 [exp] 565 / 0 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.011G062750 [exp] 379 / 3e-123 AT2G29120 258 / 7e-77 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.014G028800 [exp] 387 / 5e-122 AT5G11210 360 / 3e-112 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.001G374600 [exp] 383 / 9e-120 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.014G028500 [exp] 379 / 5e-118 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375100 [exp] 370 / 6e-115 AT2G29120 419 / 3e-132 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10013976 pacid=23170059 polypeptide=Lus10013976 locus=Lus10013976.g ID=Lus10013976.BGIv1.0 annot-version=v1.0 ATGCTTCGACTTGGTATGTTATGCTTCTTCTTTTTGTTCCTCCTCCTCGTTTCATCCGATGGAGAAAAGAGTAACGGAGCAGTCACCAAGATCGGCGCTG TAATCGACATGGAGACGAGAATCGGGAGAGAACAGAGACTCGCCATGGAAATAGCTGTCAGAGATTTCGACAACGTTTCCCTCACTTTCCGAAACTCCGG CGGCGGCGGCGGCGGCAGCAGCTTCCTCCTCCTCGGGGCGGCATACGCGGCGGAGGAGCTGATTAGAGACGAATCGGCTGAGGTCATTGTCGTGGGAACG GACAGCTGGGAGGAGGCGGTTTTGGTCGCCGACGTGGTGCAAGTCCGGGTGGTCACGTTTGCATCGTCTCCATCGGCGGCGACGGCGCCGCCAACGTTGG TGCGGATGGGCTATTCCGGCGGTCGGGGACAGATGAAATGTGTGTCGGCGCTGGTCCGGTCGTATAATTGGCGGCGGGTGGTGGCCGTTTACCAAGAGAA CGGGTTCGGGACTGATTCCTCCGACGAGTTGAATCTTCTCTCTGATGCTTTACGGGAGGTCGGAGCGGAAATCGAGCACCGGGTGGTGCTTCCCCGGTTT AATTCATCCGTTCGAGACGAGCTGATGACTGTCGTTAAATCGGTGAAATCGCGCGTGTTCATCGTTCTCCGTTCGTCGATGAGGGCGGCGGTTGACTTTT TCCGGGAAGCGAATCAGATGGGGTTGGTGGGGCCAGAGACAGCGTGGATTCTGACGGAGACAGTGGCGGATTATCTAGACTCTGTTGATTCCTCTGTTTT GTACTCTGTTCAAGGAGCTCTCGGGATTAAAAACCAGCCGGACGAAACTTTCGAACCGTACCAGAGATTCAAATCACGGTTTGACCGGGAGTTCAGGTTG ATTTACCCTGATGAGCATTACATGCAACCAAGCCTCGCTGCCCTTCGAGGTTACGATACCGTTTTAAATATCGCACTCGGAAGCAATTTCACTGGTGTTT CGGAGAAAAATGTTGGATCGAGGATCGTGAATGTGGTGGGAAATGGGTACAAGAAACTCAACTTCTGGTCGGCAAAACTTGATGGGTTCTTGTCGGAGGA GACAGAAAGGAACGGAAGCAATGAAGAAGTTATGTTGAAGTTAGAAGGTCCGGTGACTTGGCCAGGGGGCATGAAGAGGGAGCCGAAAGGGTGGGGGATG CCGATGGGGACTAAGCCGATGGTCATTGGCGTTCCGGAGATGACTATGTTTGAGTTTGTCAAGGTGAGCAACGGAAACGACGGCCAGAAGAGGTACGAGG GCTTTTGCATCGATCTTTTTAAGAAGGTGATCGAGGTTCTCGACTACGAGTTGCCTTACGAGTTCGTGCCTTACCACGGTAAGTACGAGGACTTGGTGGA CTATGTGGCCAACAAGACCTACGATGCGGTTGTCGGCGACATAACCATTCTAGCACATAGGTTGGATAAAGTGGAGTTCACACAACCATTTATGGAATCC GGTCTTTCAATCATGGTACCGGCCAGGTCGGGGAAATCAGCATGGATGTTCATGAAGCCATTCACCATGGAAATGTGGCTCGTAACGGGGACGATCTTGA TCTATACTATGCTCATCATATGGTTCTTGGAGCATCAAACTAACCCCGATTTCAGAGGTCCATTGAGGAACCAGATGGGAACAGCTCTTCTCTTCACTTT CTCCTCGCTCTTCTTCGCCCACCGAGAGAGAGTCTACAACAACCTGACTCGAGTTGTGCTGGTGGTATGGCTGTTTGTGGTGCTGATACTGAACTCGAGC TACACGGCCAGCTTGACATCAATGCTCACAGTCCTCCAACTCAAGCCCAACGTAACCGACATCGAATATCTCCGTAGGAACGGGCTTAGAGTAGGGTGCG ACGGGGACTCGTTCGTGAGGACCTACTTGGAGAAAGTGTTGGAATTCAAAGCGGACAACATCCAAATCATCGACAACGAGAATGAGTTCGAAGGCGAATT CGACAACAACCACATCTCCGCCGCATTTATGGAGCTCCCGTACCAGAAAGTCCTCATAAACCATTACTGTAGGCGGTTCACCGCTACATCACAGACATTC CGATTCGGAGGACTGGGGTTTGTGTTCCAGAAGGGCTCTCCGATAGCAGCTGATGTATCGAAGGCCATCCTGAAGCTGTCCGAAGATGGACAGTTGAAGA GATTGGAAGAGACTTGGTTCGCTCCGTCGAAAGAGTGCTTGAGCGACGAAGATGGAAATCCTGAAAGGATGAGCCTGCAGAACTTCTGGGGTATCTACAT TATATCATGTGCCACTTCTACTGTCTGCTTGGTGATCTGTCTGTTTCACTTGATGTCGACGAAGTACCGCGAGGACTACGAAGGTCACCAAGGAGATATT AATGTCTGGAGTAAGATGGTTAGGTTAGCAAAGTACCTTTACTACGGTAAGGCGGCTACGGGAAGAGTGTCTCCGACGCCGACGGTGATGACAACTTCAT CGCCGGGTGTTCATGACCCTCCTGAGACTCCTGATGAACCAAGGATTCCAGCTAATGTAGTATAG
AA sequence Show only first row Show all	>Lus10013976 pacid=23170059 polypeptide=Lus10013976 locus=Lus10013976.g ID=Lus10013976.BGIv1.0 annot-version=v1.0 MLRLGMLCFFFLFLLLVSSDGEKSNGAVTKIGAVIDMETRIGREQRLAMEIAVRDFDNVSLTFRNSGGGGGGSSFLLLGAAYAAEELIRDESAEVIVVGT DSWEEAVLVADVVQVRVVTFASSPSAATAPPTLVRMGYSGGRGQMKCVSALVRSYNWRRVVAVYQENGFGTDSSDELNLLSDALREVGAEIEHRVVLPRF NSSVRDELMTVVKSVKSRVFIVLRSSMRAAVDFFREANQMGLVGPETAWILTETVADYLDSVDSSVLYSVQGALGIKNQPDETFEPYQRFKSRFDREFRL IYPDEHYMQPSLAALRGYDTVLNIALGSNFTGVSEKNVGSRIVNVVGNGYKKLNFWSAKLDGFLSEETERNGSNEEVMLKLEGPVTWPGGMKREPKGWGM PMGTKPMVIGVPEMTMFEFVKVSNGNDGQKRYEGFCIDLFKKVIEVLDYELPYEFVPYHGKYEDLVDYVANKTYDAVVGDITILAHRLDKVEFTQPFMES GLSIMVPARSGKSAWMFMKPFTMEMWLVTGTILIYTMLIIWFLEHQTNPDFRGPLRNQMGTALLFTFSSLFFAHRERVYNNLTRVVLVVWLFVVLILNSS YTASLTSMLTVLQLKPNVTDIEYLRRNGLRVGCDGDSFVRTYLEKVLEFKADNIQIIDNENEFEGEFDNNHISAAFMELPYQKVLINHYCRRFTATSQTF RFGGLGFVFQKGSPIAADVSKAILKLSEDGQLKRLEETWFAPSKECLSDEDGNPERMSLQNFWGIYIISCATSTVCLVICLFHLMSTKYREDYEGHQGDI NVWSKMVRLAKYLYYGKAATGRVSPTPTVMTTSSPGVHDPPETPDEPRIPANVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10013976 [exp]	0	1
AT1G65810			P-loop containing nucleoside t...		Lus10035776 [exp]	8.5	0.5999
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10009947 [exp]	56.9	0.6334
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006923 [exp]	58.6	0.6018
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	93.5	0.5401
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	94.0	0.5401
					Lus10017835 [exp]	94.5	0.5401
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	95.0	0.5401
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	95.4	0.5401
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10005439 [exp]	95.9	0.5401
					Lus10000984 [exp]	96.4	0.5401

Compare expression of checked genes

Lus10013976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.