Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013951 [exp] 188 / 1e-59 ND / Lus10015398 [exp] 120 / 1e-32 AT1G29010 46 / 1e-05 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013977 pacid=23170124 polypeptide=Lus10013977 locus=Lus10013977.g ID=Lus10013977.BGIv1.0 annot-version=v1.0 ATGTGTTCGACGAGCATCAGCAGCGGCACCGCCGGCGACGGCGGGAGCGGAGACAGTCATCAGAGTCTCGGCTCTAAGAAGACAACAACCAAGAAGAAAC AGAGAGTTCCCAAGAGAGGGCCCGGTGTTGCTGAGCTGGAGAAGATCTTACGACAGCAACAGAGTCGTCAACCCTCTTCCACCACCGTGTCCGCCGCGGC TGCGGCGGCGGGGGCTCTNNNNNNNNNNNNTTACTTTCTCACCACCCCCACCGACGACGGCGACGAGAACTCTGTTTTCGATCCCTTCTCCTCCAAGATC GCAACTTTACACACTTTTATCCCACCCCACGACGTCGTTTCCAGGCGAGGGAAGTTCTATCAGATCCACCAACCTTCTTTCCCCACTATGATGAATTTCT TCCCAAGTTCTTCATCATCGTCAGTAGAGCCCCCTTCAAACCAAATCCGCCCATTTCCAGACAAACCCAGCGGTATGATCGGAGGAAAAAGACAGTGTCC ATTCTACATTGGTGATAATACAGTAGCAGCTGAAACTCCATCATCATTCCGTTTCCAAGCTCCTTCCTATCTACCTTCTTTCTCACCCAGAATGAATCAC GACACAGATTCAAGAGGGAATTTGGTGCTATTGGGTTGTCCAACAACAACCAGAGATCAACATTCCATGTTCTACAATCCTCCTCCTCCAATGCAGCAAA GATCAGTGGAGGGTTACGAGGGGTTTAAGAACAAGCCGCCGCCTTTCTTGTACAGTTTCTTAGAAGAAGCAGGAATTAGCAGTAAGGTTGAATTGGACGG GGAAGAAGAAGGAGATGGGATTGATCTGAGATTGAAGCTGTAA
AA sequence Show only first row Show all	>Lus10013977 pacid=23170124 polypeptide=Lus10013977 locus=Lus10013977.g ID=Lus10013977.BGIv1.0 annot-version=v1.0 MCSTSISSGTAGDGGSGDSHQSLGSKKTTTKKKQRVPKRGPGVAELEKILRQQQSRQPSSTTVSAAAAAAGAXXXXXYFLTTPTDDGDENSVFDPFSSKI ATLHTFIPPHDVVSRRGKFYQIHQPSFPTMMNFFPSSSSSSVEPPSNQIRPFPDKPSGMIGGKRQCPFYIGDNTVAAETPSSFRFQAPSYLPSFSPRMNH DTDSRGNLVLLGCPTTTRDQHSMFYNPPPPMQQRSVEGYEGFKNKPPPFLYSFLEEAGISSKVELDGEEEGDGIDLRLKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29010			unknown protein		Lus10013977 [exp]	0	1
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10026279 [exp]	6.0	0.9502
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	9.2	0.9589
					Lus10030775 [exp]	11.7	0.8145
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039863 [exp]	12.8	0.9525
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10006214 [exp]	13.0	0.9400
					Lus10008385 [exp]	15.5	0.9525
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	18.3	0.9517
					Lus10009393 [exp]	20.4	0.9509
					Lus10011078 [exp]	23.7	0.9496
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10011828 [exp]	25.3	0.9496

Compare expression of checked genes

Lus10013977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.