Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44180 106 / 7e-26 HD Homeodomain-like transcriptional regulator (.1.2) AT1G28420 93 / 2e-21 HD HB-1 homeobox-1 (.1) AT4G03250 58 / 1e-09 HD Homeodomain-like superfamily protein (.1) AT1G17920 44 / 9e-05 HD HDG12 homeodomain GLABROUS 12 (.1) AT4G40060 41 / 0.0004 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015400 [exp] 301 / 4e-104 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10015325 [exp] 148 / 2e-40 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 148 / 3e-40 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10017688 [exp] 120 / 1e-32 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10033644 [exp] 120 / 2e-32 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10039870 [exp] 120 / 1e-30 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 118 / 5e-30 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10027437 [exp] 43 / 0.0002 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 42 / 0.0002 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048675 [exp] 166 / 9e-47 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 153 / 4e-42 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.017G016200 [exp] 132 / 7e-35 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 81 / 4e-17 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.009G071700 [exp] 54 / 4e-08 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 52 / 1e-07 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10013979 pacid=23170099 polypeptide=Lus10013979 locus=Lus10013979.g ID=Lus10013979.BGIv1.0 annot-version=v1.0 ATGGACGCCAATTCCGGAGCAGACGATCATCATCATCATCGTGATCGTGATCCCGACGATGAATCCACGCCTGGCAACAAGAACAACGCCGCCGATTCAT CTTATTCTTCAGCTGCTGCTGCTGCTGCTGCAAATGGCAAGCCTAAACGCCAGATGAAGACTCCCTTCCAGCTCGAAACCCTAGAGAAGGCTTATTCACT GGAAACGTATCCATCAGAGGCAACGAGGACGAAGCTGTCGCAAGAACTAGGATTATCAGACAGGCAGCTGCAGATGTGGTTTTGCCATAGGAGGTTGAAG GACAGGAAGGAGGATAAGAGGGATGGTAATGGGATGAAGAAGCCTCATGGTAAGGCTTCTTCGACATTGATGAAGTCTTCTTCTTCTCCTGTGGATGATT ATCATCAGTTCAAGGCAGGGTCTGATGATCATCATCATCAGGTAGGGAGTGACGATGACTCGGAGTGTGGATCGGGGTCTAGCCGGTATGTGGAGCCTAG TAGGAACAATGTGGCTTGTTTTGACGATGGTCATGTGCCTAGAAGGTACTATCAATCTTCGTTGATGTTATCGGCTATGGAGGCTCGAGCTATTGCTTGT GTTGAGGCGCAGTTGGAGGAGCCGCTGAGGGAGGATGGGCCGGTTCTGGGGATCAAGTTTGATCCTTTGCCTCCTGATGCTTTTGGAGCTGCCATAGGTA CTGTTTTCTTAGCTGAACTTTTCAGTGATCAGTTTGTTTATGGATGA
AA sequence Show only first row Show all	>Lus10013979 pacid=23170099 polypeptide=Lus10013979 locus=Lus10013979.g ID=Lus10013979.BGIv1.0 annot-version=v1.0 MDANSGADDHHHHRDRDPDDESTPGNKNNAADSSYSSAAAAAAANGKPKRQMKTPFQLETLEKAYSLETYPSEATRTKLSQELGLSDRQLQMWFCHRRLK DRKEDKRDGNGMKKPHGKASSTLMKSSSSPVDDYHQFKAGSDDHHHQVGSDDDSECGSGSSRYVEPSRNNVACFDDGHVPRRYYQSSLMLSAMEARAIAC VEAQLEEPLREDGPVLGIKFDPLPPDAFGAAIGTVFLAELFSDQFVYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10013979 [exp]	0	1
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	7.1	0.9132
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	10.1	0.9080
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	11.7	0.8879
AT1G07120			unknown protein		Lus10031863 [exp]	14.7	0.9001
AT5G38900			Thioredoxin superfamily protei...		Lus10034368 [exp]	15.2	0.8628
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008828 [exp]	18.6	0.8304
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	18.8	0.8753
AT2G33360			Protein of unknown function (D...		Lus10014479 [exp]	19.8	0.8404
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	20.2	0.8791
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10009984 [exp]	21.2	0.8266

Compare expression of checked genes

Lus10013979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.