Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20560 408 / 3e-143 DNAJ heat shock family protein (.1) AT4G28480 404 / 2e-141 DNAJ heat shock family protein (.1.2) AT3G08910 392 / 5e-137 DNAJ heat shock family protein (.1) AT5G01390 390 / 4e-136 DNAJ heat shock family protein (.1.2.3.4) AT1G59725 344 / 6e-118 DNAJ heat shock family protein (.1) AT1G10350 342 / 5e-117 DNAJ heat shock family protein (.1) AT5G25530 339 / 6e-116 DNAJ heat shock family protein (.1) AT3G47940 330 / 2e-112 DNAJ heat shock family protein (.1) AT2G20550 266 / 8e-88 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 162 / 1e-46 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015402 [exp] 537 / 0 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10017687 [exp] 410 / 8e-144 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 382 / 2e-132 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 380 / 6e-132 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10030803 [exp] 350 / 2e-120 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 338 / 1e-114 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10041254 [exp] 334 / 4e-114 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10036668 [exp] 335 / 5e-114 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10021961 [exp] 333 / 9e-114 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G136700 [exp] 423 / 5e-149 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 423 / 6e-149 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 413 / 7e-145 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 412 / 1e-144 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 402 / 1e-140 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 376 / 1e-130 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 354 / 7e-122 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 342 / 2e-117 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 342 / 2e-117 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 331 / 8e-113 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013981 pacid=23170032 polypeptide=Lus10013981 locus=Lus10013981.g ID=Lus10013981.BGIv1.0 annot-version=v1.0 ATGGGAGTGGACTATTACAGTATTCTGCAAGTAAACAAGAACGCTACTGACGATGATCTGAAGAAAGCTTACAGGAAGCTGGCGATGAAATGGCACCCTG ACAAGAATCCTACCAATAAGAAGCAAGCCGAGGCCAAGTTCAAGGAAATCTCTGAAGCTTACGATGTGCTGAGCGATCCTCAGAAGAGAGCAGTATACGA TCAGTACGGGGAAGAAGGATTGAAAGGTCAGGTTCCGCCGCCTGATCCATCAGGCGTCGGCGGCGGTGGTGCGACGTTCTTCACTACAGGCAATGGCCCG ACGGCGTTCAGGTTCAATCCAAGAAACGCAGACGATATCTTTGCCGAATTCTTCGGCTCCTCTTCACCGTTTGGCGGCTCCGCCGGTGGTCCAGGGATGA GAACTGGTACTAGATCGTTCGGTGGGATGTTTGGCGGGGGCGGAGGCGGCGTAGAAGACATATTCGCTTCGATGAACTCGTCAGGTTCTCGTAAAGCGCC GCCGATCGAGAGAAAACTCCCTTGCAGCTTGGAAGATCTCTACAGAGGTACAACCAAGAAGATGAAGATCTCGAGAGAAATAGCTGACGCCAGCGGGAAG ACGATCCCGGTGGAGGATATACTGACGATCGACATAAAACGGGGATGGAAGAAAGGAACGAAGATCACATTCCCTGAGAAGGGGAACGAGCTGCCGAATT CGAATCTAGTTCCGTCCGATTTGATCTTCATTGTCGACGAGAAGCCGCACAGTACGTTTACCAGAGACGGGAATGATTTAATCCTGACGAAGAAGATATC TCTGGCAGAGGCTCTGACAGGATGCACGGTCAACCTGACAACTCTGGACGGTAGGAGCCTGACGATTCCGATTGAGAAGGTGATTCAGCCGGATTACGAA GAGGTTGTGCCAAGAGAAGGAATGCCGATCCAGAAGGATCCTTCGAGGAAAGGGAATCTGAGGATTCGGTTTAAGGTTGGTTTTCCGGCGAGGTTAAGTG CTGAGCAGAAGGCTGGGATTAAGAGGCTTTTGGGTTGA
AA sequence Show only first row Show all	>Lus10013981 pacid=23170032 polypeptide=Lus10013981 locus=Lus10013981.g ID=Lus10013981.BGIv1.0 annot-version=v1.0 MGVDYYSILQVNKNATDDDLKKAYRKLAMKWHPDKNPTNKKQAEAKFKEISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPDPSGVGGGGATFFTTGNGP TAFRFNPRNADDIFAEFFGSSSPFGGSAGGPGMRTGTRSFGGMFGGGGGGVEDIFASMNSSGSRKAPPIERKLPCSLEDLYRGTTKKMKISREIADASGK TIPVEDILTIDIKRGWKKGTKITFPEKGNELPNSNLVPSDLIFIVDEKPHSTFTRDGNDLILTKKISLAEALTGCTVNLTTLDGRSLTIPIEKVIQPDYE EVVPREGMPIQKDPSRKGNLRIRFKVGFPARLSAEQKAGIKRLLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20560			DNAJ heat shock family protein...		Lus10013981 [exp]	0	1
AT5G07330			unknown protein		Lus10042036 [exp]	1.4	0.9749
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10002319 [exp]	2.0	0.9801
AT1G53540			HSP20-like chaperones superfam...		Lus10009085 [exp]	3.9	0.9718
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026099 [exp]	5.5	0.9639
AT1G44414			unknown protein		Lus10018166 [exp]	6.0	0.9316
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	6.0	0.9669
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	6.3	0.9379
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10010897 [exp]	7.1	0.9286
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10012648 [exp]	8.1	0.9507
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	10.9	0.9391

Compare expression of checked genes

Lus10013981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.