Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28410 201 / 2e-63 unknown protein AT4G31340 50 / 9e-07 myosin heavy chain-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015403 [exp] 543 / 0 AT1G28410 189 / 9e-59 unknown protein Lus10026967 [exp] 52 / 2e-07 AT4G31340 449 / 3e-156 myosin heavy chain-related (.1.2) Lus10020166 [exp] 50 / 1e-06 AT4G31340 451 / 8e-157 myosin heavy chain-related (.1.2) Lus10041099 [exp] 48 / 5e-06 AT4G31340 397 / 3e-136 myosin heavy chain-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048500 [exp] 250 / 9e-83 AT1G28410 186 / 9e-58 unknown protein Potri.006G276900 [exp] 49 / 2e-06 AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2) Potri.018G003700 [exp] 49 / 3e-06 AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013982 pacid=23170041 polypeptide=Lus10013982 locus=Lus10013982.g ID=Lus10013982.BGIv1.0 annot-version=v1.0 ATGCCGTCGGTAGCTCGTCTCTGTCTGTTCGCTTCCACGTTGGCATTGCTCTTCGCTATCATTTCTCCAGCTCAAGTAGTCGACCCTCGCAGCTTGATCG GTCAATTGAACGAAGCCAAGCTCAAGATCTCACAATTAGAATCGACTCTAGAGCATGTCGTCGGCGACGTGGACGCTATCGATCGGAGACTTGAAGACGG AGAGAAGCGAATCGAGGAGTCCGAGAGGAAGCTCGTTGATCTCTATGCTGATATCAAGAAGTTCATGGATGAGTTATCAGCTGGAGATAGGAAGATTACT GCGCTTGAAGAAGAGATAGGCATTCTGTGGACTATGCTGAGGAAGAACAACTTCGATATCCATGTCCTGAAAACTAGAGCTGAAGAATCTGAGGAGAGGC TGGATGGGCTGGCTTCCCATGTTGAGAAGATTACAGACGTTGTTTCAGAACGGTGGATCCAAATCCAACAGTTTGAGCAGGCTCTTCAACTCGTCGAAAT GAGGCTTATTAAGGCCAAAAGGGTAGCAAGGTATTCAAGGTGCACATTCTTGAAGTTCATGGATGATCTACACGGAAGATATATTCCAAGAACTCTTCGA TCTTTGAACCAATGGTTATTAGGCGATGCATCTACCATCAGACCATATGTTTCCTACGCCATGGAGCAGTTGAAAAGATTCTTTGCAACAGTCAAGGAGT CCCACTTCGAGTTGCAGAGCTTCATCAAGCAGATAATGGAAGACTATGAACTCACAGCATCTATCGCGAACAGCGAAGTAGTGTTCTTCGTGGCGTCTGC TCTGATCGTGTTCCCTGTATTGAGTGCATGGTTACTTCTATCATCTCATCTGCAATAG
AA sequence Show only first row Show all	>Lus10013982 pacid=23170041 polypeptide=Lus10013982 locus=Lus10013982.g ID=Lus10013982.BGIv1.0 annot-version=v1.0 MPSVARLCLFASTLALLFAIISPAQVVDPRSLIGQLNEAKLKISQLESTLEHVVGDVDAIDRRLEDGEKRIEESERKLVDLYADIKKFMDELSAGDRKIT ALEEEIGILWTMLRKNNFDIHVLKTRAEESEERLDGLASHVEKITDVVSERWIQIQQFEQALQLVEMRLIKAKRVARYSRCTFLKFMDDLHGRYIPRTLR SLNQWLLGDASTIRPYVSYAMEQLKRFFATVKESHFELQSFIKQIMEDYELTASIANSEVVFFVASALIVFPVLSAWLLLSSHLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28410			unknown protein		Lus10013982 [exp]	0	1
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10005235 [exp]	6.7	0.9162
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	7.3	0.9194
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	8.2	0.9224
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10023241 [exp]	8.4	0.9075
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	11.9	0.9210
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	12.3	0.9191
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	14.3	0.9125
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	17.7	0.9091
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10015680 [exp]	18.2	0.9085
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	18.4	0.9008

Compare expression of checked genes

Lus10013982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.