Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33855 101 / 1e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015404 [exp] 216 / 1e-72 AT2G33855 136 / 1e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048400 [exp] 166 / 3e-53 AT2G33855 126 / 8e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013983 pacid=23170062 polypeptide=Lus10013983 locus=Lus10013983.g ID=Lus10013983.BGIv1.0 annot-version=v1.0 ATGGAAGATCCACTTCCGCCACCATCTCCACCACCGTGGGAGCCAACAATCACCGCCATAACCCACCTCCTAACCTCCCCAATAATCACCCCATCACTCC ACTCACAATTCTTCATCGCCAAACAAATCCCCTGCTACCTCAACTGGGAGTACCCACCAATCCTCTGCCGCCGATCCTCATCTCTCATCCGCCGATGGCG TGCCTCCGGTTTGGCTTCGCCGCAGAACTCGTGGCGGTGCAAGTGCCCCTACCAGCAGCCGCCGCCGCTGACTCTGGCAAGAGGATTGGAGGAAGCGCAG TGGGGTGATGAAGACATGAAGGAGCGATTCAGCAAGAGAGCTAGGAGGAAGAGGATGTTCAGTAACGTACATCCTTTCTTCCCTGTTATGATTCCCAACC TTTGTGCCTTCTTGTTGCTGCTTTGGAACCCTTTCCCTGACGTCGTCGATGGGCCCCAGCTTCTCCGACGGCGATGTAAACCATGTAAATTAACATGTAC TGTTATGATGATTTCGTAG
AA sequence Show only first row Show all	>Lus10013983 pacid=23170062 polypeptide=Lus10013983 locus=Lus10013983.g ID=Lus10013983.BGIv1.0 annot-version=v1.0 MEDPLPPPSPPPWEPTITAITHLLTSPIITPSLHSQFFIAKQIPCYLNWEYPPILCRRSSSLIRRWRASGLASPQNSWRCKCPYQQPPPLTLARGLEEAQ WGDEDMKERFSKRARRKRMFSNVHPFFPVMIPNLCAFLLLLWNPFPDVVDGPQLLRRRCKPCKLTCTVMMIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33855			unknown protein		Lus10013983 [exp]	0	1
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	2.2	0.9611
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	2.4	0.9588
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	2.4	0.9513
AT2G33855			unknown protein		Lus10015404 [exp]	2.8	0.9283
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	3.7	0.9301
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10010484 [exp]	6.5	0.9055
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	6.6	0.9377
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	7.1	0.9323
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	9.2	0.9095
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10023383 [exp]	9.7	0.9064

Compare expression of checked genes

Lus10013983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.