Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040835 [exp] 201 / 3e-64 ND 38 / 0.002 Lus10015405 [exp] 114 / 5e-31 ND / Lus10031183 [exp] 99 / 2e-24 ND / Lus10031773 [exp] 54 / 1e-08 ND / Lus10022860 [exp] 48 / 4e-06 AT2G20362 49 / 2e-07 unknown protein Lus10007847 [exp] 48 / 4e-06 AT3G10430 76 / 7e-15 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114900 [exp] 72 / 6e-14 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.017G012200 [exp] 64 / 4e-11 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G170300 [exp] 60 / 8e-10 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Lus10013984 pacid=23170101 polypeptide=Lus10013984 locus=Lus10013984.g ID=Lus10013984.BGIv1.0 annot-version=v1.0 ATGGCATATTTTTGTTGGGATATTATCCGCACCGTAGTGTATTTGCGTTATGGAATCCGGCAACCGGTTCGTTTAGGGAACTGCCGGTTGTTCCCCCAAC CAGGCCTAGGATCCTACCCCCCCGATGTAAGAGGTGCTTCATGCCCCGTCGAGTTTGAGGTGGATACATTAGCTAATGATTTCAAAGTGATTCTTATTAA ACAGTTCTTCAGGATAACTTATAAGGGATCTCCAGATCTAGTATGTTTCAATTCTTCTGAATTCCTGAAACAAGTGATGGTGTACGCACTTGGTATTGAT ACATGGAAGGAGTTGGAAGATTGCCGGCATGAAGTCGAGATCCGTTATCTCACGGACTGCTACAAGTACTCAAACGGATTCGGTTTCTGGTTATGTAAGT CTCCTGTTGCGGTGCTAGCGTTCGACTTTAGGAGTGAGGTTTTCCGTGTGATGAACGATCCTAGCTTCGAAAATAATCGGATGAAGAAACTTGTGATGTA CAGGGGTTCGGTTGCTTTACTTTCCCAGCAAGTTGGGAATCGTCGAGACAAGTTTGATGTCTGGTTTCCGAATGGAGAACAACGGTGTTGGGTCAAACAA TCCGCCGTTGTTCCTTCGGATCCTCATGAAATGGTGGTAGGAGATTGGAGGGAAGATAAGGTCCTGGTGTATGATCGCAATCATAATTTGTTGAAGTTGT TGGACCCTGCAACTAAAGCCACTACAACTTTCCTGCGGCATTGTAATTATACTCTCTTTGATTTTGGCATCTTTGTTTACAAAGATAGCTTGGTGTTCGT GGGTGACGAGTTTCGACGAATTCACATTTTCGGCGAGGAATTCACATTTACGGCAAGGAATTCACATTTCCAGCAAGATTTGATTTCTGAATGCAATTTT GCTAAACAACAGAGGGTACCTTCTATCAGCCCCAGCGAAAAGATTTTCTAG
AA sequence Show only first row Show all	>Lus10013984 pacid=23170101 polypeptide=Lus10013984 locus=Lus10013984.g ID=Lus10013984.BGIv1.0 annot-version=v1.0 MAYFCWDIIRTVVYLRYGIRQPVRLGNCRLFPQPGLGSYPPDVRGASCPVEFEVDTLANDFKVILIKQFFRITYKGSPDLVCFNSSEFLKQVMVYALGID TWKELEDCRHEVEIRYLTDCYKYSNGFGFWLCKSPVAVLAFDFRSEVFRVMNDPSFENNRMKKLVMYRGSVALLSQQVGNRRDKFDVWFPNGEQRCWVKQ SAVVPSDPHEMVVGDWREDKVLVYDRNHNLLKLLDPATKATTTFLRHCNYTLFDFGIFVYKDSLVFVGDEFRRIHIFGEEFTFTARNSHFQQDLISECNF AKQQRVPSISPSEKIF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013984 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10014106 [exp]	1.4	0.7822
					Lus10042417 [exp]	8.2	0.7257
AT5G46940			Plant invertase/pectin methyle...		Lus10043346 [exp]	18.7	0.6786
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	22.1	0.7126
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10035662 [exp]	23.4	0.6753
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10022982 [exp]	29.1	0.6861
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031752 [exp]	34.6	0.6750
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	36.2	0.6665
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028614 [exp]	39.8	0.6591
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	40.0	0.6910

Compare expression of checked genes

Lus10013984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.