Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013985 pacid=23170095 polypeptide=Lus10013985 locus=Lus10013985.g ID=Lus10013985.BGIv1.0 annot-version=v1.0 ATGGAGTCTCCTTGCGAAGGAAACATTGAGAATGATCCTTATGCTTGTTTTTTCCCTCCCATTGAAGCCTATACTGTTGTCGATAGACATTTCCATGAGG CTATCTGCAATGTCTGTAAGTTTCTAAGAGACAAGAAGGAATCGGAACCGGTTGAGGATTTGATTCCTGAATGGTTTCTAAGTAACGTCATAAAATTCAG TTCTTCAATTGATGAAGCAGTTGAGGAGCCAACGTTACCATTTGTCGATTTGGATATTAGTAATTGGACTATGTCCATTTTTGAAACCGGTTTGGTGACC GGTGAAGAATTTTTAGATAAGCTATATTTGGAAGCTGATCGTGGTTGTCAGATTTCTCCTTCTGGATTTTTCATGCTTTTTTTGGTTGCCGATCGAGTAA TCATCAGACTTAGGGATGAGGATAAGACGAGAATTTTCCAGATCAAGAAAAATGGGTCGTTCACCTCCATGGTGGTTGTCTATAAGGATTGTGATTGGCC TTCCACTGTTATACATTTTGATCCTAATCTGGATAGTGGTTTTTTTGAGAAATTGGAAGTTTCTGATAGTTTTCAGAAGAAGTTCATTAATGCAAGATAT CCTCCCCCATCTCCTCCTCCCTCTACGGGTATGGTGCCACTCTTGGACGTGTTACGGTCAATGCCGTCGGTGTCCACTTATATTTCTTCAACCCGTGAAA TGCATTCTTATCTATTGCTTTTAGACGTGATGCGGTTGATGTCACAGACTCGTTCTGTGATTAGTGATATGTCAGACGTTTCTGATGTGTACAATTTGCA TAAGCTCACATTCAAATCTTCCCTGGTTGGATTAAATTCATTTTTGAGCACATTGAAATTTGGTTTCGCGAATGGTGTTCCCTTTCTTGAGTATCCAACA CAAGAAAGTAATGAAGCTCCTTTTCCTTTGGATGGAATGAGTTTGCTGTCTAACAGATGCTCTAGGTTTTTCAACATTCAATCAGTTTCCGAGCACTTAA CACAGTTGAGTCGTAATTTAGAGTGGAAGATTCTCCTTCAAGCCGTGGTGGGTAGATTTGGCCTTTTGGAAGGAACCAATGGAGAAGAAACAATATGGTT GGATAGTGCAATACCATTGTTATCTGATGTAGTATCATATGTTACTGTTGATTCTATTTCCACGTCTGCTTCACTTATCTTGGAGTATCAGAGTTCTACC TATCCGATGTTTGTGAGACCTCCATTCGAGGTCTACACAAGACATTATAAAGTCTTTGGTTCGTGGACAGAACCTGAATTGATCAGGCTGGTCTTAAAGA AGGTATCGGATTGCCGCCTTGTTTGGATAGATACAAATTCACTTCAACAAGGTGTTCAAAATGTCAGAGATCTTACTGTAGAAGAAATCAATTCACGGTT TGTAGCCATGAAAAGTGCCACATACGCGGAACTGAAGATGGCCTTTGATTTATCTGGTCTTTCAGATCGCTTGTGTGTAGTTTTGGAGGAGATGTGGAAA TTCGCCAATGGCGTTTGGACTGAAGGGTCAATTGCTAGACTTATGGAATCTGTTGAGCGGAACCGTCGTGGTACTTTATGGGGATCAGAAGTATATGAAG ATTTTGCTTGCTCTACATGGAAACGTGAAGATCTTAAGAGTAAGTATGCGGAAGTTGGACTTGGACGAGGATAG
AA sequence Show only first row Show all	>Lus10013985 pacid=23170095 polypeptide=Lus10013985 locus=Lus10013985.g ID=Lus10013985.BGIv1.0 annot-version=v1.0 MESPCEGNIENDPYACFFPPIEAYTVVDRHFHEAICNVCKFLRDKKESEPVEDLIPEWFLSNVIKFSSSIDEAVEEPTLPFVDLDISNWTMSIFETGLVT GEEFLDKLYLEADRGCQISPSGFFMLFLVADRVIIRLRDEDKTRIFQIKKNGSFTSMVVVYKDCDWPSTVIHFDPNLDSGFFEKLEVSDSFQKKFINARY PPPSPPPSTGMVPLLDVLRSMPSVSTYISSTREMHSYLLLLDVMRLMSQTRSVISDMSDVSDVYNLHKLTFKSSLVGLNSFLSTLKFGFANGVPFLEYPT QESNEAPFPLDGMSLLSNRCSRFFNIQSVSEHLTQLSRNLEWKILLQAVVGRFGLLEGTNGEETIWLDSAIPLLSDVVSYVTVDSISTSASLILEYQSST YPMFVRPPFEVYTRHYKVFGSWTEPELIRLVLKKVSDCRLVWIDTNSLQQGVQNVRDLTVEEINSRFVAMKSATYAELKMAFDLSGLSDRLCVVLEEMWK FANGVWTEGSIARLMESVERNRRGTLWGSEVYEDFACSTWKREDLKSKYAEVGLGRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013985 [exp]	0	1
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10036282 [exp]	9.3	0.8452
					Lus10035267 [exp]	17.9	0.8224
AT3G50160			Plant protein of unknown funct...		Lus10038339 [exp]	23.2	0.7663
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	33.4	0.8192
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026532 [exp]	43.6	0.7846
					Lus10019211 [exp]	52.8	0.7387
AT5G36930			Disease resistance protein (TI...		Lus10020534 [exp]	75.8	0.8005
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10002783 [exp]	77.5	0.7694
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	100.6	0.7455
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10028966 [exp]	100.9	0.7731

Compare expression of checked genes

Lus10013985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.