Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15680 55 / 6e-08 F-box family protein (.1) AT1G47300 45 / 7e-05 F-box family protein (.1) AT5G18160 43 / 0.0004 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040838 [exp] 826 / 0 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10013987 [exp] 733 / 0 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10003349 [exp] 685 / 0 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10007302 [exp] 647 / 0 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10040816 [exp] 518 / 0 ND / Lus10007303 [exp] 493 / 5e-173 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10013907 [exp] 485 / 3e-169 ND / Lus10016522 [exp] 461 / 4e-155 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10002769 [exp] 436 / 1e-151 AT1G15680 64 / 2e-11 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 117 / 5e-28 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 76 / 2e-14 AT3G15910 58 / 5e-09 unknown protein Potri.009G132400 [exp] 75 / 4e-14 ND / Potri.005G043500 [exp] 62 / 4e-10 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.013G067800 [exp] 58 / 9e-09 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.007G027300 [exp] 52 / 8e-07 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.007G027200 [exp] 50 / 4e-06 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.004G000900 [exp] 49 / 6e-06 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G215900 [exp] 49 / 9e-06 AT5G07610 101 / 2e-23 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013986 pacid=23170103 polypeptide=Lus10013986 locus=Lus10013986.g ID=Lus10013986.BGIv1.0 annot-version=v1.0 ATGGCGACCGAGAACTGCACCTCGGATTGGGATGTGCCACTAAGCCAACTCCGTCGTCGTTCCGCCAAACGACAACGAATCAATTCACAAACAAACCTAA TTCCTATCAGCAAACTCGGAGCCGGTCTACTAGCAGAGATTCTGATTCGCCTTCCCAACCCAAGATCCGCCTGCCGGTGTAAGCTCGTCTGCAAGCGATG GGCCTCCCTGATCTCCAGTCCTCGCTTCAATGGCCGTTTCGTTTCTCACCACCAGACTATGAACCATCCACCTATGCCGCTGGATCCATACAAGCTGAAG TCGATCATCCTCAGATTTCTCCCTCCCATGCCTTGTACAGACGCTCTCAGAGTTTTGGATTGCAACAATGACTTGGTTTTATGTGGGTTTTGGGATATCG GTTGCGAGGATCGGGAACATAGCTGCACGTATTTGGTCTGCAATCCATTTACAAAGCAGTGGATTGCTCTTCCTATAGCGCCTAGGAAGCATGGGCGTTA CATGTTACCCGCTGCAAGGTTAGTTTGTGAACCTCGGATTTCTAATAAGCTTGATCTAGGAGGTGCAGATGACGACCAAGAAGCAGCATTTGTTTATTCT GAGTATCGCTTCCGTGTGGTTTGTATTTATCAAGTCCCTCTACCAATCCCTGCTATAAAGCTAGATGTGTTTTGTTCGGATTCTGGAGAATGGACCAAGG AAGCTCTTGTCTGTGATGATCATGTTAGAACTGGTTCAAAAAGTGTAATTTCGTGCAATGGGGAGTTGTTTTGGAAGTATATTGAACGTCGTGGTGACCC ATTGAAGGTTCTGTTGGCTGTGTTTAATCCTTTCCGCCTTGATATGCCTCCCACTTCCATTGATGCTTCTCCATTCCGTGTGTATCCACATTGGTTTATT TCCGGCTCACAAGGGGTGTTGCACGTAATTGCATTAGAAAATGAAACTGTACCTGTTCGTTCAAGCATCTGGAGACTTGAAGAAGACCGTAAATCTTGGA GGAAGCAATGCGAGGGGTTGGTGAACAAGACATCAAAATGTAGTAACTATGAAGTTGAGGGCTGTTATCAACCCTTTTTGCATCCACATAACCCGGAAAT TGTCTTCTTCAACCCGGTTCCTTATACAAATAAGAATGTTATATTGTGCTGCGATTTGGGAAGGGAAGAGCTAGAATTCTTCACTAAAGTTGAAGGGCCG CATGATGTCTTTTACCTTCAGGTGTTCCAGCCGAGTGTTTCCTGCTGGGCTACTCCAATTCCAAGGTACGAGGAGTTGCGAGGCATGTACGATGGAAACT ACAGCTTTTGGGTTCAGAGCAGCAGTGAATCAAAATCAAAAGCACACTCCCTCCCTCCCTCCCACTATATTTGCATGAATGATGTTATGAAATCAGCCTT CTACAATGACTATATAGAACTTGTCACTGAAGAAGGAACTCTGAAGATGGTTGCTGAAATCATGCAGCGTAGGAAGAATAAAATCGCTGACATAGTTCTA CAAGAAATGCAGCAGCATCGTTTTCCCTATGACAAGGAATTGGATGTACTAGAAGCTGATTTGAAAGATGTTGAAGCTGAAATGGCCGCCATTAGCAAAA GGAAAGAAGAAGTGAAGCAGAGACTTGTGTGGGAAACGCAGGCAGAGCTTCCTTATCCTCCAGGTGAAGTTTTATTGAGTTTACCTTCTTAA
AA sequence Show only first row Show all	>Lus10013986 pacid=23170103 polypeptide=Lus10013986 locus=Lus10013986.g ID=Lus10013986.BGIv1.0 annot-version=v1.0 MATENCTSDWDVPLSQLRRRSAKRQRINSQTNLIPISKLGAGLLAEILIRLPNPRSACRCKLVCKRWASLISSPRFNGRFVSHHQTMNHPPMPLDPYKLK SIILRFLPPMPCTDALRVLDCNNDLVLCGFWDIGCEDREHSCTYLVCNPFTKQWIALPIAPRKHGRYMLPAARLVCEPRISNKLDLGGADDDQEAAFVYS EYRFRVVCIYQVPLPIPAIKLDVFCSDSGEWTKEALVCDDHVRTGSKSVISCNGELFWKYIERRGDPLKVLLAVFNPFRLDMPPTSIDASPFRVYPHWFI SGSQGVLHVIALENETVPVRSSIWRLEEDRKSWRKQCEGLVNKTSKCSNYEVEGCYQPFLHPHNPEIVFFNPVPYTNKNVILCCDLGREELEFFTKVEGP HDVFYLQVFQPSVSCWATPIPRYEELRGMYDGNYSFWVQSSSESKSKAHSLPPSHYICMNDVMKSAFYNDYIELVTEEGTLKMVAEIMQRRKNKIADIVL QEMQQHRFPYDKELDVLEADLKDVEAEMAAISKRKEEVKQRLVWETQAELPYPPGEVLLSLPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013986 [exp]	0	1
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	11.7	0.8713
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	12.7	0.8727
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10035533 [exp]	16.7	0.8552
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	20.5	0.8369
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001744 [exp]	20.7	0.8651
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10043330 [exp]	21.1	0.8187
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	25.9	0.8613
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	26.8	0.8545
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	28.2	0.8547
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10028286 [exp]	28.3	0.8456

Compare expression of checked genes

Lus10013986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.