Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23950 58 / 1e-08 F-box family protein (.1) AT1G15680 56 / 7e-08 F-box family protein (.1) AT3G23970 54 / 4e-07 F-box family protein (.1) AT3G26010 52 / 1e-06 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G07610 47 / 3e-05 F-box family protein (.1) AT5G52610 46 / 6e-05 F-box and associated interaction domains-containing protein (.1) AT1G51290 45 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT3G28223 45 / 0.0002 F-box family protein (.1) AT2G40910 44 / 0.0004 F-box and associated interaction domains-containing protein (.1.2) AT3G57580 44 / 0.0005 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003349 [exp] 882 / 0 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10013986 [exp] 757 / 0 ND 55 / 7e-08 Lus10007302 [exp] 704 / 0 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10040838 [exp] 697 / 0 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10040816 [exp] 532 / 0 ND / Lus10007303 [exp] 516 / 2e-178 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10013907 [exp] 474 / 3e-161 ND / Lus10016522 [exp] 466 / 2e-153 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10004929 [exp] 437 / 9e-147 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 132 / 1e-32 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 99 / 1e-21 AT3G15910 58 / 5e-09 unknown protein Potri.009G132400 [exp] 76 / 2e-14 ND / Potri.005G043500 [exp] 66 / 3e-11 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.008G016300 [exp] 53 / 2e-07 AT5G07610 53 / 2e-08 F-box family protein (.1) Potri.010G254000 [exp] 52 / 1e-06 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.007G027200 [exp] 51 / 3e-06 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.004G112400 [exp] 49 / 1e-05 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G000900 [exp] 45 / 0.0001 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G038000 [exp] 44 / 0.0005 AT1G64290 175 / 3e-51 F-box protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10013987 pacid=23170086 polypeptide=Lus10013987 locus=Lus10013987.g ID=Lus10013987.BGIv1.0 annot-version=v1.0 ATGGCGATCGAGAACTGCATCTCGGATTGCGATGGGCGGATAAGCGAACCCCATCGCTGTCCCGAAAAACCACAACGTATCAGTTCAGAAGCAAACATGA CGATCAGCGGATTGGGAACCGATCTTCTTGTAGAGATTCTGATGCGCCTCCCCAATCCTAGATCCGTCTGCCACTGTAAACTCGTCTGCAAGCGGTGGAA CTCCCTGATCTCCAATCCTCCCTTCAACCGCCGTTTCGTTTCTCACCATCAGACCAGGAACCACCCACATATGCCGGTGGATCCGTACAAGCTGAAATCG TTCATCCTCAGCTTACTCCCTCCCATGCCTTGTAGAGTTCGGAACAATCTCAGAGTTTTGGATTGCAACAATGACTTGGTTTTATGCGGATTTGGGGATG TAGATTGCGACGATGGGGAACGCGGCAGATCGTACTTGGTCTGCAATCCATTTACGAAGCAGTGGATCGCTCTTCCTTTAGCGCCTAGGAAACATGTGGG TTATATGGTAACGGCAGCTAGGATAGTCTGTGAACCCCGAAATTTTAATAAGCTTGATCTAGGAGGAGAAGACCAAGCTGCATTTGTTTTTTCTGAGTAT CGCTTCCGCGTGGTTTGTATTTATCAAGTCGTTCTACCACAGGTGGCCATAAAGCTAGACGTTTTTTGTTCCGAGTCTGGACAATGGACCAAGGAAGCTC TTGTCTGTATTTCTCGTGTTCGAACACCTGGATCAAGAACTGTAATTTCGTGCAACGGGGAGTTGTTTTGGAAGTATGATATAGTGATTGCTGCTAGGAA TTTGGTGGCTGTGTTTAATCCTTTCCGTCTTGATATGCCTCCCACTTCCATTGATGCTTCTGCATTCCGTGTGTATCCACGTTGGTTTATTTCCCGCTCA CAAGGGGTGTTGCACGTAATTGCATTAGAAAATGAAACTGTACCTGTTCGTACAAGCATCTGGAGACTCGAAGAGGACCGCAAATCTTGGAGGAAGCAAT GTGAGGGGTTGGTAAACAATACCTCAAAGTGTTGTAACTATGAAGTTGAGGGCTGTTATCGACCCTTTCTGCATCCACAGAAGCCGGAAATTGTCTTCTT CAATCCGCTTCGTTCTGAAGAAAAGAATGCTTTATTGTGCTGCAATTTGAGAACAGACGAGGTAGAGTTCTTCGCCAAAGTACAAGGGAAGCCTGATTTC TTTTACCTTGAGGTGTTCCAGCCAAGGATTTCTTGCTGGCCTACTCCAATTCCAAGGTATGATGAGTTGCGAGGCATGTACGATGGAAGCTGCAGCTTTT GGGTTCAGAGCAGCGTTGAATCAATAACACACTCCCCTCCATCCCTCAATATTTGCAAGGATGAAGTTATGAAATCAGCCTCTTACAAGGACTACATTGA ATGTCTCATTGAAGAGGCAAATCGGGACATTGCGGCTGAAATCATTAAGCGGAGGAAGAACAAAATCAGCGAGATTGTTAGAAGAGAAAGGCAGCTGCCT CGTTTCCCATTTGACAAGGAATTGGATGAAGTAGAAACTGTTTTGGAAGATATTGGAGATGAAGTGGTCGTTGTTGGCAAAATGAAAGAAAACCTGAAGA AGAGACTTAGGATGTGCAAAACGTCGGCAGAGCTTTCTAATCCTCCAGATCCAGTCATTAGGAACTTGGCGGTTCTGTTTAGGAAGCGCAGACGCCGCGG TATGGTTTTTCTGCGCGGTATGGTTAAAACAGAAAGGAAGCAGCCTCGTTTTGCTGATGACAAGGAAGCTGGTTTCAAAGATGTTGTATCCTATGTGGCC GCTGTCGATAAACCTGAACAACTGGAGCAGGGACTTTTGTGTGGAACGTGCGCAGAGGTTCCTGATCATCTGGTCTCTATCAAAAGTGTCTCTGCAGAAG CAACTACCACGAACATGGTGGCTCCGAGTAGGAAGCACAAACTCTGCAGGATGGTTATAACAGAAGGGAAGCAGCCTCGTTTTGCTGATGACGAGGAAGC TGGTTTCAAAGATGTTGTATCCTATGTGGCTGCTGTTGGCAAACCGAAAGAACTGGAGCAGGGACTTTTGTGTGAGACGTCGGCAGAGCTTCCTTATCAT ACAGGCACTGTCAAAAGTGTATGTGCAGAGGTAACTCGCGACATCGTGGCTGAAATCAAACAGAGGAAGAACAAAATCAGCGAGTTTCTCTTAAGAGAAA GGCAGCAGCCTCGTTTACCTAATAACAAGTTAGAGGATTTGAAAGATGTTGAATCCTATATAGCCGCTATTGGGAATTCGGAACAACTGAAGCAGGGAGT TTTGTGTGAAACGTCGGCAGAGGTTCCTCATCCTCTAGTCCCAATTAAAAGACCCAGTCTGTTGGTTCAACTTGTTGCACCTCCATTCGAAGGGGCGATA ATGCCTGTGGAGACACAAAGTACTGAGGACTGGGAAAAAAGTATGCTTGTTCTTCTGGGGCGGGAATGGTAG
AA sequence Show only first row Show all	>Lus10013987 pacid=23170086 polypeptide=Lus10013987 locus=Lus10013987.g ID=Lus10013987.BGIv1.0 annot-version=v1.0 MAIENCISDCDGRISEPHRCPEKPQRISSEANMTISGLGTDLLVEILMRLPNPRSVCHCKLVCKRWNSLISNPPFNRRFVSHHQTRNHPHMPVDPYKLKS FILSLLPPMPCRVRNNLRVLDCNNDLVLCGFGDVDCDDGERGRSYLVCNPFTKQWIALPLAPRKHVGYMVTAARIVCEPRNFNKLDLGGEDQAAFVFSEY RFRVVCIYQVVLPQVAIKLDVFCSESGQWTKEALVCISRVRTPGSRTVISCNGELFWKYDIVIAARNLVAVFNPFRLDMPPTSIDASAFRVYPRWFISRS QGVLHVIALENETVPVRTSIWRLEEDRKSWRKQCEGLVNNTSKCCNYEVEGCYRPFLHPQKPEIVFFNPLRSEEKNALLCCNLRTDEVEFFAKVQGKPDF FYLEVFQPRISCWPTPIPRYDELRGMYDGSCSFWVQSSVESITHSPPSLNICKDEVMKSASYKDYIECLIEEANRDIAAEIIKRRKNKISEIVRRERQLP RFPFDKELDEVETVLEDIGDEVVVVGKMKENLKKRLRMCKTSAELSNPPDPVIRNLAVLFRKRRRRGMVFLRGMVKTERKQPRFADDKEAGFKDVVSYVA AVDKPEQLEQGLLCGTCAEVPDHLVSIKSVSAEATTTNMVAPSRKHKLCRMVITEGKQPRFADDEEAGFKDVVSYVAAVGKPKELEQGLLCETSAELPYH TGTVKSVCAEVTRDIVAEIKQRKNKISEFLLRERQQPRLPNNKLEDLKDVESYIAAIGNSEQLKQGVLCETSAEVPHPLVPIKRPSLLVQLVAPPFEGAI MPVETQSTEDWEKSMLVLLGREW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23950			F-box family protein (.1)		Lus10013987 [exp]	0	1
AT2G40095			Alpha/beta hydrolase related p...		Lus10028294 [exp]	3.2	0.7112
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10022942 [exp]	8.1	0.7373
AT5G52410			unknown protein		Lus10038854 [exp]	9.4	0.7634
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	9.9	0.7264
AT4G12010			Disease resistance protein (TI...		Lus10009107 [exp]	17.2	0.6552
AT2G18770			P-loop containing nucleoside t...		Lus10013024 [exp]	21.8	0.7031
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022886 [exp]	22.6	0.7367
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	25.4	0.6870
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	27.7	0.7069
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	37.1	0.6994

Compare expression of checked genes

Lus10013987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.