Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49180 457 / 1e-154 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 69 / 2e-12 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G48630 67 / 1e-11 RACK1B_AT receptor for activated C kinase 1B (.1) AT5G50230 66 / 7e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 63 / 5e-10 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT5G08390 62 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 61 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 60 / 3e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 59 / 3e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G47410 61 / 5e-09 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015408 [exp] 482 / 8e-164 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10023372 [exp] 323 / 1e-102 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10015407 [exp] 261 / 4e-81 AT3G49180 169 / 3e-49 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023370 [exp] 244 / 6e-75 ND 37 / 0.008 Lus10016759 [exp] 204 / 2e-57 AT3G49180 209 / 2e-62 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10022454 [exp] 200 / 3e-53 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10028961 [exp] 176 / 4e-48 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10024677 [exp] 136 / 3e-36 ND 42 / 2e-04 Lus10025732 [exp] 129 / 2e-32 AT3G49180 130 / 7e-34 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027200 [exp] 599 / 0 AT3G49180 503 / 2e-177 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G093300 [exp] 234 / 1e-68 AT3G49180 226 / 8e-69 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G384200 [exp] 164 / 7e-44 AT3G49180 125 / 7e-32 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G035500 [exp] 72 / 6e-13 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G262900 [exp] 67 / 1e-11 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G173500 [exp] 68 / 2e-11 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.012G052700 [exp] 66 / 2e-11 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 67 / 3e-11 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.015G041600 [exp] 64 / 1e-10 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 64 / 1e-10 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10013988 pacid=23170028 polypeptide=Lus10013988 locus=Lus10013988.g ID=Lus10013988.BGIv1.0 annot-version=v1.0 ATGGAAGAGGTGCTGGTAGTTGCGTCTTCGTCAATCGACGCCGGCATCGGCTGCTGGAACCTGGCAACCGGAGAAGAGCAACTCCGCCACAAAACCTGCG CCTCCACCCCTCACGGCCTTTCCGTCGTCGGCAGCCGATTCATCGCCTCTTCCCAGCTACAAAACGCTAAATCCTCCGGTTCCATTCTTTACTGGTCTTG GTCCAAGCCTCATGTGGAGGTGAAGAGCTTCCTGGCAGAGCCGATAAAGCCTCTCGTTGCTAATAGCCAAGGAACGTACCTCGTCGGCGGAGGATTGTCT GGAAACATATATCTTTGGGAGGTTGCTACGGGTAGGTTGCTTAAGAAATGGCGTGGTCATTACAGGGGGATTACCTGCTTGGTGTTCAATGATGACGAAT CGCTTATCTTTTCTGGGTCAGAGGATGGTTCAGTTAGAGTCTGGTCACTAGTAATGCTTTTCGATGATCACCAGAGGGAACAAGCGAGCAGTCAGTATTT GCATAGTTTTGCAGAGCATACTTTGCGTATAACTGACTTGGTTACCGGCTACTGTGGAGGGAATGCTGTTATAATCTCAGCTTCCGAGGACCGTACTTGT AAGGTATGGAGCTTATCTAAGGGCGAGTTATTAAGAAGTGTTGTGTTTCCTTCTATAATCGACGCATTGGCATTAGACCCTGGGGAACTCGTCTTTTATG CTGGAGGTAAAGATGGAAAGATATATTTGGCTGCACTGAATGCTAGCTATAGCTCTTCTATCCAAACTCAATGGCCATACATCGTTGGTTCATTGTCTAG CCAGAGCAAGGCTGTGACTTCGTTAACATATAGCGCAATCGGGAACTTCTTGCTTGCCGGTTCGGAGGATGGCTTGATACGCGTCTGGAACCCCAAGACT TCTAACGTTGTTCGCATATTCAAACATGCTAAAGGTCCGGTGAACAATATAGTAGTAACAAGGAGACCTCTGTACCTAAATCCTCGAATATCCTCTACCG TACATGGAATGCCAAGAGCGCAAAAGTCTTCACTCCCACCCCAACTACATAAATATTCGAGCTCGAATGATGGAACTGGAAGCACTGATCCGGTCGTTAC CCTGCAGTCGTTTAACGATAATCGGCTAGAGGCTGCCTATGTCACAGGTCAAGTGATTGTCGATCAAATCAAAGAGCTTCAGCAAAAGGGTTCTTCAGCT GCGGCCGAAATGGAAGTGGAGAAGCTGAAACACGATCGTGATCGGTTCATGGAGGTGGCCGAGAAATGGAAGAGAACGTACAACGGCCTGCATGAGTATT GCATCAACGAGTTATTAGAGGGAGATCGTCCCCCGGCAGCATCCGACATAGTTCTGTGGAATCCGGCCACCTCAGAAACAAAAATCGTCCCTCCGGGTCC TAATTACCACCCTTGTCACTCTACTCGTATCGGCCTGGTCATTCGTGCTCAGCGCACAGGTTTTGGGTACGATCCCAAAACCGATGACTACAAAGTCGTC CGGGTTGTGGAATTCATTGAAGGTTTGGAGTATGATGATCGTGAGTTCCTTATTGATCCTTCCGAGTTCTACCATGGTCCTACTCCCCTTATTTTCACAG AGGTTTATAGCTTGAGGAACGATTCATGGAAGACATTGAATGTGGATACACATTCACTGGAGGGTAAATCTACCTGTGAGTCTATCTATAACACGCAGGC TCAAGAAACCATACATCTCCGTCAGCAGTGGGACACATCTCGAAACGAAAAATGCTACTGGTTTCGCTGCGAGCAAAGCGAGGGAGTTTCTGCTGTGATC TCCTTCGACATGAGCACCGAAGTGTTCGAATTAATCACCATTCCCCAACCCACTGGCCTTGAACAGCACAAAGAGGATGATCGTATTGACTACCCCGACA CGATTCACAAGAAGACCTGGATCTGGGATGTCGAGTCCTGTTTCATGTTGAAGGATCGGGTGCTTTTGGTAACTTACTGGGCTCGGTGGATGAAGCACTT TACTAGTAGTATTCCAAAGAACGAGACATGGGTAATGTTGAAATTCGGAGTTGCTGAATCTTGGACAAAACTATCTACTTGGCCGATACGATCGTTGCAG TTTGGCAACGGCGGTCGCCTTGAACTCTGGAAGAGTGGCACGTCCATTTGCGGGCTCAGAGAAATGGCCGTTTATGAGGTTGAAACGGTCAAAAAGATCA GCGAAAATATCGAAATTGAAGGCACGGTTGCGCAGTTCCAAGCTCAAGTTTTCACTCCAACTCAAGTTTCGATGTCTCAACTACTAGCCGACCGGCCAGA GCAAGATGGGTAG
AA sequence Show only first row Show all	>Lus10013988 pacid=23170028 polypeptide=Lus10013988 locus=Lus10013988.g ID=Lus10013988.BGIv1.0 annot-version=v1.0 MEEVLVVASSSIDAGIGCWNLATGEEQLRHKTCASTPHGLSVVGSRFIASSQLQNAKSSGSILYWSWSKPHVEVKSFLAEPIKPLVANSQGTYLVGGGLS GNIYLWEVATGRLLKKWRGHYRGITCLVFNDDESLIFSGSEDGSVRVWSLVMLFDDHQREQASSQYLHSFAEHTLRITDLVTGYCGGNAVIISASEDRTC KVWSLSKGELLRSVVFPSIIDALALDPGELVFYAGGKDGKIYLAALNASYSSSIQTQWPYIVGSLSSQSKAVTSLTYSAIGNFLLAGSEDGLIRVWNPKT SNVVRIFKHAKGPVNNIVVTRRPLYLNPRISSTVHGMPRAQKSSLPPQLHKYSSSNDGTGSTDPVVTLQSFNDNRLEAAYVTGQVIVDQIKELQQKGSSA AAEMEVEKLKHDRDRFMEVAEKWKRTYNGLHEYCINELLEGDRPPAASDIVLWNPATSETKIVPPGPNYHPCHSTRIGLVIRAQRTGFGYDPKTDDYKVV RVVEFIEGLEYDDREFLIDPSEFYHGPTPLIFTEVYSLRNDSWKTLNVDTHSLEGKSTCESIYNTQAQETIHLRQQWDTSRNEKCYWFRCEQSEGVSAVI SFDMSTEVFELITIPQPTGLEQHKEDDRIDYPDTIHKKTWIWDVESCFMLKDRVLLVTYWARWMKHFTSSIPKNETWVMLKFGVAESWTKLSTWPIRSLQ FGNGGRLELWKSGTSICGLREMAVYEVETVKKISENIEIEGTVAQFQAQVFTPTQVSMSQLLADRPEQDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	0	1
AT1G69070			unknown protein		Lus10019174 [exp]	2.8	0.9552
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	3.5	0.9427
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	3.5	0.9363
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	4.5	0.9449
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	5.2	0.9266
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	5.3	0.9477
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	6.3	0.9382
AT3G02760			Class II aaRS and biotin synth...		Lus10030341 [exp]	6.6	0.9369
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	7.5	0.9340
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	7.5	0.9465

Compare expression of checked genes

Lus10013988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.