Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28440 184 / 2e-60 Nucleic acid-binding, OB-fold-like protein (.1) AT2G33845 180 / 2e-58 Nucleic acid-binding, OB-fold-like protein (.1) AT1G23750 176 / 2e-57 Nucleic acid-binding, OB-fold-like protein (.1) AT1G10590 172 / 7e-56 Nucleic acid-binding, OB-fold-like protein (.1.2.3) AT1G03810 172 / 1e-55 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015411 [exp] 279 / 8e-98 AT2G33845 186 / 4e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029155 [exp] 174 / 1e-56 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002172 [exp] 172 / 7e-56 AT2G33845 189 / 1e-62 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013010 [exp] 171 / 1e-55 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030617 [exp] 169 / 1e-54 AT1G23750 229 / 7e-79 Nucleic acid-binding, OB-fold-like protein (.1) Lus10039889 [exp] 169 / 2e-54 AT2G33845 185 / 1e-60 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030871 [exp] 168 / 4e-54 AT1G23750 226 / 2e-77 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114800 [exp] 194 / 3e-64 AT2G33845 214 / 3e-72 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G396100 [exp] 188 / 5e-62 AT1G23750 194 / 5e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.007G137600 [exp] 186 / 2e-61 AT4G28440 193 / 2e-64 Nucleic acid-binding, OB-fold-like protein (.1) Potri.017G014400 [exp] 184 / 1e-60 AT4G28440 194 / 9e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.010G041000 [exp] 184 / 1e-60 AT1G23750 234 / 1e-80 Nucleic acid-binding, OB-fold-like protein (.1) Potri.008G189900 [exp] 182 / 8e-60 AT1G23750 239 / 9e-83 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013989 pacid=23170090 polypeptide=Lus10013989 locus=Lus10013989.g ID=Lus10013989.BGIv1.0 annot-version=v1.0 ATGGCGACCACCACGAACTCGAACCAGCAGCAGCAGCAGATGAGGTCGAGCAGCGCTGGAGCTGCGGCGCCGGCGGCGGGGAACAGAGTGGTGGAGAAGC GGAAGCCGGTGTTCGTGAAAGTGGAGCAGCTAAAGCCCGGAACCCAGGGCCACAACCTGATCGTCAAGGTCTTGTCCTCCAACGCCGTCGTCCAGCAGCA ACAAGGACGACCCACCGCGCCTCAGCGCTTCCGCAATACCAGAATCGCCGAGTGCGTCATCGGCGACGAGACTGGGTCCATCCTCTTCACGGCTCGAAAT GATCAAGTTGACATGGTGAAGCCAGGGACCACGATCATTATCCGGAACTCAAGGATCACCATGTTCAAGGGTTCGATGAGGCTCACTGTGGACAAATGGG GACGAATTGAAGTCACCGAGCCTGCCAAGTTTGCAGTCAACGAGGATAACAATCTGTCGCTGGTGGAATACGAGCTGGTCACCGTTGCTGCGGATGATTA G
AA sequence Show only first row Show all	>Lus10013989 pacid=23170090 polypeptide=Lus10013989 locus=Lus10013989.g ID=Lus10013989.BGIv1.0 annot-version=v1.0 MATTTNSNQQQQQMRSSSAGAAAPAAGNRVVEKRKPVFVKVEQLKPGTQGHNLIVKVLSSNAVVQQQQGRPTAPQRFRNTRIAECVIGDETGSILFTARN DQVDMVKPGTTIIIRNSRITMFKGSMRLTVDKWGRIEVTEPAKFAVNEDNNLSLVEYELVTVAADD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	0	1
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10002636 [exp]	1.0	0.8866
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	2.4	0.8683
AT5G14680			Adenine nucleotide alpha hydro...		Lus10032142 [exp]	2.6	0.8513
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	3.0	0.8614
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	3.5	0.8597
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10035948 [exp]	5.1	0.8046
AT4G04614			unknown protein		Lus10006902 [exp]	5.2	0.8419
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	6.7	0.8563
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	6.7	0.8266
AT5G62200			Embryo-specific protein 3, (AT...		Lus10031684 [exp]	6.9	0.8302

Compare expression of checked genes

Lus10013989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.