Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26990 63 / 4e-12 Drought-responsive family protein (.1) AT3G05700 61 / 4e-11 Drought-responsive family protein (.1) AT1G56280 46 / 4e-06 ATDI19 drought-induced 19 (.1.2) AT3G06760 44 / 2e-05 Drought-responsive family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015412 [exp] 274 / 1e-93 AT5G26990 123 / 1e-34 Drought-responsive family protein (.1) Lus10015214 [exp] 74 / 2e-16 AT5G26990 194 / 5e-63 Drought-responsive family protein (.1) Lus10031467 [exp] 62 / 1e-11 AT5G26990 253 / 1e-85 Drought-responsive family protein (.1) Lus10037717 [exp] 59 / 6e-10 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10017097 [exp] 54 / 5e-09 AT5G49230 131 / 2e-38 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10037819 [exp] 47 / 4e-06 AT5G49230 198 / 3e-64 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10010305 [exp] 40 / 0.0005 AT3G06760 108 / 5e-29 Drought-responsive family protein (.1.2) Lus10013420 [exp] 40 / 0.0008 AT3G06760 124 / 3e-35 Drought-responsive family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057200 [exp] 182 / 8e-58 AT3G06760 110 / 2e-29 Drought-responsive family protein (.1.2) Potri.013G011200 [exp] 71 / 5e-15 AT3G05700 250 / 1e-84 Drought-responsive family protein (.1) Potri.005G020900 [exp] 67 / 2e-13 AT3G05700 224 / 3e-74 Drought-responsive family protein (.1) Potri.010G000800 [exp] 58 / 4e-10 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.008G213400 [exp] 56 / 2e-09 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.012G086500 [exp] 46 / 3e-06 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2) Potri.019G027300 [exp] 39 / 0.0003 AT5G49230 123 / 1e-36 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10013990 pacid=23170084 polypeptide=Lus10013990 locus=Lus10013990.g ID=Lus10013990.BGIv1.0 annot-version=v1.0 ATGGATTCGAATTTCTGGACGTCGAGGATCGCCGCCGCGAAGCGGCAGTACACTTTGAACCACCATAACCAGACCTCCCACCTGGATCGGTTGAGCGTTG AGGAGTTCGAGGTGGAGGAGGATGTCCGGCCGGACATCCCTTGCCCTTACTGTTACGAGGCGTTCGTCGTCTTGTCTCTCAGTTCGCATCTGGAGGAGGA GCATCCTTGCGAGTCCAGAGTCACCAGACGTCGCAGGCTACGCAGAGTTGCAATCCCCAACAGTCAAACACTGTCCCTTCTTGGCCGGGATCTACGCGAG GCACATCTGCAAATTCTGCTAGGTGGTGGTGATGTTGGAAGTGGATATAGATTATCATCAGCATCGAGCAATGCTAATGTCTCGACGACTTCTGAAGCAG CTACTGATCCTTTCCTTTCGTCGCTCATCTTGAATTTCCCATCCTCCGAAGTAGAAGAGATTTCGAAATCTGTCGTGACAGGTTCAGATGACTCCTTTGT AAAGAGCAGCAGTGCTTCTCCCTACGTATGGAGGTCAAGCTTTGATCCGTCGCTGAGCCCCGAAGAACGGGAGAAGAAGATGAAGCAAGCTGCTGGGAGA GCTGGTTTTGTGCAGAATCTAGTTCTGTCAACTTTGTCACTAGACTGA
AA sequence Show only first row Show all	>Lus10013990 pacid=23170084 polypeptide=Lus10013990 locus=Lus10013990.g ID=Lus10013990.BGIv1.0 annot-version=v1.0 MDSNFWTSRIAAAKRQYTLNHHNQTSHLDRLSVEEFEVEEDVRPDIPCPYCYEAFVVLSLSSHLEEEHPCESRVTRRRRLRRVAIPNSQTLSLLGRDLRE AHLQILLGGGDVGSGYRLSSASSNANVSTTSEAATDPFLSSLILNFPSSEVEEISKSVVTGSDDSFVKSSSASPYVWRSSFDPSLSPEEREKKMKQAAGR AGFVQNLVLSTLSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26990			Drought-responsive family prot...		Lus10013990 [exp]	0	1
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	4.1	0.9078
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10018611 [exp]	8.9	0.8829
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	15.6	0.8918
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	18.9	0.8738
AT2G44420			protein N-terminal asparagine ...		Lus10033495 [exp]	20.6	0.9023
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	20.7	0.8798
AT2G45320			unknown protein		Lus10000786 [exp]	21.4	0.8814
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	22.0	0.8887
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	24.7	0.8825
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039812 [exp]	25.3	0.8757

Compare expression of checked genes

Lus10013990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.