Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 625 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 615 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 578 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G33170 575 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 570 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 561 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 559 / 0 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 545 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 532 / 6e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 532 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015414 [exp] 1844 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 612 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 599 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 597 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 597 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 587 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 581 / 0 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004892 [exp] 567 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 547 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 1295 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 677 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 630 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 624 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 622 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 599 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 587 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 575 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068600 [exp] 568 / 0 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G164900 [exp] 566 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013991 pacid=23170132 polypeptide=Lus10013991 locus=Lus10013991.g ID=Lus10013991.BGIv1.0 annot-version=v1.0 ATGAACTTCTGCCTCTATCCTACCCTCCGACGGAAATCCCTTCACCGGCGGGCATCTATTCAGGCGACTAACCCCTACAACACCACCGTCTCTTCCTCCC CTAGATTTCTCAACTTCCCAGATACATCCAGCGAATTCATCCAAAACCGACACTGCACAACAACAACAACTACCCCTCCCGAAGGGAACAACAGCCCAGA GCAATCTCTGGCATCAATCTCCGCTCGCTACTCCAGGCTTCTATCGCAATGCACGTCCGCAAAATCGTTAGCTCCGGCGCTGGAAGTTCACGCCCATCTG ATCAAGTTCGGAATCCAGCTGGACACGAGGCTGAGGAACTTGGTGGTTAACGTGTACTCGAAGTGCAGGGCATTCGGATATGCACGCAAGGTGATCGACG AAATTCCTGAACCGGATTTAGTAGCTTGGTCTGCTTTGATTTCGGGATATTCGCAGAATGGTTACGGCAAGGAAGCCATTCGTACCTTTAAGGAGATGCA TTCGTTGGGGATCAAATGTAACGAGTTTGCTTTCCCCAGTGTGTTCAAGGCTTGCACTTTGACTGATAATCTGCAGCTTGGAAGGCAGGTCCATGGAAAT GTGGTGGCTACTGGGTTTGAGAATGATGAGTTTGTTTTGAATAGTATGGTTGTTCTGTATGCGAAATGTGGGGAGATTTCGGATTCAAGGAGAGTGTTTG AAGCGATTCCTTGTATGAGTGTTGTGTCTTGGAATGCCTTGTTGTCTTCCTACGTGCAGCGTGATTCGTTTATGGAGGCGTTGGAGTTGTTTCACGACAT GATTCTGACGAAACCCGAAATAAGGCCGAACGAGTTCAGTTTATCGACTATGATAAATGCCTGCACTGGATTGGAAGACAGTGGCCAAGGTAGGAAAATC CATGGATACTTGATAAAGCTCGGGTATGAGTTGGATTTGTTCTCTGCTAATGCACTTGTTGACATGTATGCTAAGCTGGGGAATCTCGAAGATTCCGTGA GTGTCTTCAGTAGCATTGCGAAACCCGACATTGTTTCCTGGAACGCTGTGATTGCCGGTTGTGTTCTTCTCGAGCGGCATTATTACGCATTGGAGTTGTT TAGGAAGATGAATGTGTCGAGTATATCCCCAAATACGTTTACTTTATCCAGCGTTCTTAAAGCTTGCGCTGGAGAAGGACTAGGGGAGCCCGGGAGAGAG CTGCACGGGTATTTGATAAGGAGGGATTTGGGGAAAGATACATTCTTAGGAGTTGGACTTGTGGATTTGTATGCCAAGAGTGGTTACATGGATTTGGCAA GGTTAGTATTTAACTTAATTCCGGAAAAAGACTTGATTTTGTGGAATGCTGTGATCTCCGGATACTCGCTTAATGGCAAAGATGTAGAAGCGGTTTCTCT TTTCCCTTTGTTGTACCAGGAAGGAGTAGGGTTCAACCAGACTACTTTGTCAACTGTTCTTAAATCAACAGCTAGCTTGCAGGCTACCCCAATTTGCAGG CAGATACACACACTTAGTTTGAAATCTGGGTTTGAATCCGACAGTTATGTCGTAAACAGCCTTGTCGATGCTTATGGCAAATGTGAACAGACAGAAGATG CATTGAACGTGTTTAGAGAAAGCCCAACTCTAGATTTGTTGGTTTTTACATCCATGATAACTGGTTATTCCCAAGGTGGGCAAGGTGAAGAAGCTTTTAA GCTCTATCTGGATATGCAGAGCCTTGGTATAAAGCCAGATGCTTTTGTTTTCAGCTCTCTTTTGAATTCCTGTGCGAACTTGTCTGCATATGAACAGGCA AAGCAAGTTCATGTCCAAGTACTGAAATTCGGATTCATGAACGATGTTTTCGCTGGGAATTCTCTCGTCCATACATACGCGAAATGTGGATGCATAGACG ATGCTGAGCGTGCTTTCCACGAGATTTCCGAGCGAAGTATCGTGTCATGGTCTGCACTCATTGGTGGAATGGCTCAACATGGACATAGAAGACAAGCCCT CGAGTTATTCGACCAGATGATCGAAGAAGGTACCGTTTCTCCGAATCATATAACTCTCGTCAATGTCCTTTCAGCCTGCAACCACGCAGGGTTAGTAGAG GACGCAAAAAGATACCTCTTTTCGATGCAAGAGTTGTTCGGCATCACTCCGACTCAAGAACACTATGCCTGCATGATTGACATCCTCGGCCGAGCAGGGA AGCTCGAAGAGGCTATGGAGTTAGTAAACACAATGCCATACGAAGCGAATGCATCGGTATGGGGGGCACTCCTCGGTGCTGCAAGAATACATAAAAATAT AGACTTGGGACGAAAAGCTGCAGAGATGCTACTTGTTCTTGAGCCAGAGAAATCAGGCACGCATATACTGCTAGCGAATATCTACTCATCGGCCGGAATG TGGGAAGGTGCAGCCAAGATAAGAAAGTTTATGAAGGATAGTAGAGTTAAAAAGGAACCCGGGATGAGCTGGATGGAGATCAAGGATGAAGTTCACACCT TTATAGTTGGGGACAGAAGCCATCCCAGAAGCGATGAAATCTACAGAAAGCTTGAAGATTTGAGGGAGCCTTTGAAGAAGGCTGGATATGTTCCTATGGT GGAGACAGAGCTTCACGATGTTGATGTGAGCGAAAAGGCGAAGCTTTTGTACCACCATAGTGAGAAACTCGCTGTGGCTTTCGGGTTGATCGCTACTCCT TCTGGTGCTCCCATTAGGGTGAAGAAGAACTTGAGGGTTTGCTTGGATTGCCATACTGCACTCAAGCTCGTCTCAAAAATCTCGTCCAGGGAGATCGTTG TTAGGGACATTAACAGGTTCCATTGCTTCCGGGATGGGGTGTGTTCTTGCGGCGATTATTGGTAA
AA sequence Show only first row Show all	>Lus10013991 pacid=23170132 polypeptide=Lus10013991 locus=Lus10013991.g ID=Lus10013991.BGIv1.0 annot-version=v1.0 MNFCLYPTLRRKSLHRRASIQATNPYNTTVSSSPRFLNFPDTSSEFIQNRHCTTTTTTPPEGNNSPEQSLASISARYSRLLSQCTSAKSLAPALEVHAHL IKFGIQLDTRLRNLVVNVYSKCRAFGYARKVIDEIPEPDLVAWSALISGYSQNGYGKEAIRTFKEMHSLGIKCNEFAFPSVFKACTLTDNLQLGRQVHGN VVATGFENDEFVLNSMVVLYAKCGEISDSRRVFEAIPCMSVVSWNALLSSYVQRDSFMEALELFHDMILTKPEIRPNEFSLSTMINACTGLEDSGQGRKI HGYLIKLGYELDLFSANALVDMYAKLGNLEDSVSVFSSIAKPDIVSWNAVIAGCVLLERHYYALELFRKMNVSSISPNTFTLSSVLKACAGEGLGEPGRE LHGYLIRRDLGKDTFLGVGLVDLYAKSGYMDLARLVFNLIPEKDLILWNAVISGYSLNGKDVEAVSLFPLLYQEGVGFNQTTLSTVLKSTASLQATPICR QIHTLSLKSGFESDSYVVNSLVDAYGKCEQTEDALNVFRESPTLDLLVFTSMITGYSQGGQGEEAFKLYLDMQSLGIKPDAFVFSSLLNSCANLSAYEQA KQVHVQVLKFGFMNDVFAGNSLVHTYAKCGCIDDAERAFHEISERSIVSWSALIGGMAQHGHRRQALELFDQMIEEGTVSPNHITLVNVLSACNHAGLVE DAKRYLFSMQELFGITPTQEHYACMIDILGRAGKLEEAMELVNTMPYEANASVWGALLGAARIHKNIDLGRKAAEMLLVLEPEKSGTHILLANIYSSAGM WEGAAKIRKFMKDSRVKKEPGMSWMEIKDEVHTFIVGDRSHPRSDEIYRKLEDLREPLKKAGYVPMVETELHDVDVSEKAKLLYHHSEKLAVAFGLIATP SGAPIRVKKNLRVCLDCHTALKLVSKISSREIVVRDINRFHCFRDGVCSCGDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	0	1
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	1.7	0.9194
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	3.5	0.9035
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10024222 [exp]	3.6	0.8691
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	4.0	0.9141
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	5.7	0.9024
AT1G18485			Pentatricopeptide repeat (PPR)...		Lus10036071 [exp]	5.7	0.8629
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	8.4	0.8448
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	11.2	0.8687
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	12.7	0.8770
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	13.6	0.8773

Compare expression of checked genes

Lus10013991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.