Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28360 40 / 9e-05 AP2_ERF AtERF12 ERF domain protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047500 [exp] 68 / 6e-15 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.011G056900 [exp] 61 / 2e-12 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013993 pacid=23170102 polypeptide=Lus10013993 locus=Lus10013993.g ID=Lus10013993.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCGTCCTCGTCCTCCAACGCCGCCGCCTTTGCCTTCTCCGCCGCCGTTGCCGCCTCCCCACCATCAACATGCCTCTCCTTAGATCTCAACA CCCCTTCCGACCACCACCAGTTTCACACCTTCCACCGCCACCACCACCACCGCCGCTGGCCTTCCGTCGCCGCCGCCTCAGTCGCCGGCACTCGCTTCTC CCTCGGCGAGTTCCTCCAGACCGCCGTCCTCAAGGATACCGGATTCGCCTCCGCCGCCGGAGTTTCAGCCCCGGTGCATATGCAGGAGAATGTCGCCGCC GCCGGAGGCGGCCGTACTCCTTCCACGGCGGCGTTATTGGGGATCGTCAGACGTGGACTGCCCATCGACTTGAACGAGCCACCGCCGCTATGGATGTAA
AA sequence Show only first row Show all	>Lus10013993 pacid=23170102 polypeptide=Lus10013993 locus=Lus10013993.g ID=Lus10013993.BGIv1.0 annot-version=v1.0 MASSSSSSNAAAFAFSAAVAASPPSTCLSLDLNTPSDHHQFHTFHRHHHHRRWPSVAAASVAGTRFSLGEFLQTAVLKDTGFASAAGVSAPVHMQENVAA AGGGRTPSTAALLGIVRRGLPIDLNEPPPLWM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	0	1
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003887 [exp]	1.0	0.9399
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10041328 [exp]	1.4	0.8765
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	3.0	0.8239
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10004182 [exp]	3.3	0.7943
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10018356 [exp]	3.5	0.8152
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	3.7	0.8137
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	4.2	0.8060
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	5.3	0.8181
AT3G20750	GATA	GATA29	GATA transcription factor 29 (...		Lus10042504 [exp]	5.5	0.8023
AT1G78190			Trm112p-like protein (.1)		Lus10024634 [exp]	7.6	0.7579

Compare expression of checked genes

Lus10013993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.