Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28340 873 / 0 AtRLP4 receptor like protein 4 (.1) AT1G25570 256 / 1e-76 Di-glucose binding protein with Leucine-rich repeat domain (.1) AT3G05990 144 / 1e-36 Leucine-rich repeat (LRR) family protein (.1) AT1G49100 132 / 5e-32 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 131 / 9e-32 Leucine-rich repeat protein kinase family protein (.1) AT2G14510 131 / 1e-31 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 130 / 2e-31 Leucine-rich repeat protein kinase family protein (.1) AT3G46340 128 / 1e-30 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 128 / 1e-30 Leucine-rich repeat protein kinase family protein (.1) AT1G51890 126 / 5e-30 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015417 [exp] 1165 / 0 AT1G28340 902 / 0.0 receptor like protein 4 (.1) Lus10015320 [exp] 910 / 0 AT1G28340 895 / 0.0 receptor like protein 4 (.1) Lus10041488 [exp] 288 / 8e-89 AT1G25570 880 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10034275 [exp] 284 / 4e-87 AT1G25570 874 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10002456 [exp] 126 / 1e-30 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10025849 [exp] 124 / 2e-29 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10010528 [exp] 103 / 1e-23 AT3G19230 395 / 4e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10027903 [exp] 101 / 2e-22 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002405 [exp] 101 / 2e-22 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056800 [exp] 919 / 0 AT1G28340 931 / 0.0 receptor like protein 4 (.1) Potri.004G047300 [exp] 896 / 0 AT1G28340 928 / 0.0 receptor like protein 4 (.1) Potri.010G129300 [exp] 278 / 5e-85 AT1G25570 852 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G117000 [exp] 267 / 4e-81 AT1G25570 816 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G150200 [exp] 136 / 3e-34 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 135 / 1e-33 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G004700 [exp] 130 / 2e-31 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.009G102300 [exp] 122 / 2e-29 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.002G242700 [exp] 103 / 8e-23 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G043700 [exp] 97 / 5e-21 AT3G46280 216 / 3e-63 protein kinase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Lus10013994 pacid=23170025 polypeptide=Lus10013994 locus=Lus10013994.g ID=Lus10013994.BGIv1.0 annot-version=v1.0 ATGTTCTTGGCTTCTTGTGCAGCGCCATGGATAATAAGGATAAGCTGCGGGTCTCGAGTGAACGTGAACACGGAGCCAACGAACACGAGATGGTACAAGG ATTTCGCGTACACGGGAGGGATTCCATCGAACCGAACAACTCCTCCAAGCTTCCTTACACCTCCCCTCAAGACGCTTCGTTACTTCCCATTATCAGCAGG TCCCAACAATTGCTACAACATTCATAGAGTCCCCAAGGGGCATTACACAGTGAGGGTATTCTTCGGTCTGATTGATCATCCTGACTTTAACGACGAGGCA TTGTTCGATGTATCGGTGCAAGGCACGCAGGTTTACTCGTTGCAGTCGGGTTGGAGCGGTCAGGACGATCAGACATTCGTTGAAGCTCAGGTGTTTCTCT TGGACGGCACATCTTCCATCTGTTTTCATAGTACAGGACATGGCGATCCGGCGATTGTTTCGATTGAGATTCTTCAGATCGATAACGAGGCATACAATTA CGGCCCTGGGTGGGGCCAAGGGGTCATGATGAGGACGGTTAAGAGGTTGAGCTGCGGTAATGGAAAGCCGAGGTTCGATGTGGGTTATAGCGGAGACCAA TGGGGTGGGGATAGGTTTTGGGGACCGATTACGAGTTTCAGCCAGAGTTCTGATCAAGCTAGATCTACTGAAGGTGGAATCAAGCAGGCTTCAAATGCAC CAAATTTCTACCCGGAAGCTCTCTATCAGACTGCCATTGTAAGTACCGACGCTCAACCGGACTTGGAGTACACAATGGACATCGAACCTAACAGGAACTA CTCGATTTGGCTGCATTTTGCCGAGATCGATGCTACAGTGACGAACGTAGGGGAAAGGGTGTTTGACATCCTTATTAATGGCGATGTCGCGTTCAAAGAA GTAGACGTTATGAAAATGAGCGGAGCACATCACACAGCGGTTGTTCTTAACACGACTGTTCCGATCGATGGAAGGTCGTTAACGATTACTCTAAGTCCGA CACAAGGGAATCATGCTATAATCAACGCCATTGAGATTTTTGAAGTTTTTAGAGCTGAATCAAAAACTCTATCCCAAGAAGTGGCGGCTCTACAAAAACT CAAAATCGCATTAGGACTTCCTCTACGATTCGGGTGGAATGGCGATCCATGCGTTCCTCAACAACATCCATGGAGTGGAGCCAATTGCCAATTCGACAGC ACTAGTTTCAGATGGTTCATTGATGGGCTTGATCTTGACAATCAAGGTTTGAGAGGTTTCCTGCCAGATGACATATACAAACTTCAATACCTACAGAGCA TAAACTTGAGTGGCAATAGTATCCACAGCTCTATGCCGTCGACGATAGGGAACATAAGCAGTTTGGAACTATTAGACTTTTCCTATAACTTATTCAACGG GTCGATTCCTGAAAGCCTCGGGCAGTTGTCGAATTTGCGTAGACTGAATCTCAACGGCAACCATCTATCAGGAAGAGTCCCAGCTGCACTAGGAGGAAGG CTCTTAAGTGGAGCTAGCTTTAACTTTACTGATAACTCCGGCCTCTGTGGTGCACCCGGACTGCCAACGTGCGGGCCACGCCTCACCGCTGGTGCGAAAA CCGGCATTGCTTTTGGCGCATCCTTCGGATTTCTCCTCATCGTAGCCTGCGTAACTTGCTGGTGTAAAAGGCGGCAGAACATTCTCAGAGCTAAGCAGAT TGCAGCAAGAGGAGCTCCATATGCAAAGAAGAGAACCCATCTGTCGCATGACATCCAATTATCAAGGCCACATTACAACAACACCGGCCACCATGCTAGA ACAGCTGCTGAAAACGGACCTAGCTTGCTATCGTGA
AA sequence Show only first row Show all	>Lus10013994 pacid=23170025 polypeptide=Lus10013994 locus=Lus10013994.g ID=Lus10013994.BGIv1.0 annot-version=v1.0 MFLASCAAPWIIRISCGSRVNVNTEPTNTRWYKDFAYTGGIPSNRTTPPSFLTPPLKTLRYFPLSAGPNNCYNIHRVPKGHYTVRVFFGLIDHPDFNDEA LFDVSVQGTQVYSLQSGWSGQDDQTFVEAQVFLLDGTSSICFHSTGHGDPAIVSIEILQIDNEAYNYGPGWGQGVMMRTVKRLSCGNGKPRFDVGYSGDQ WGGDRFWGPITSFSQSSDQARSTEGGIKQASNAPNFYPEALYQTAIVSTDAQPDLEYTMDIEPNRNYSIWLHFAEIDATVTNVGERVFDILINGDVAFKE VDVMKMSGAHHTAVVLNTTVPIDGRSLTITLSPTQGNHAIINAIEIFEVFRAESKTLSQEVAALQKLKIALGLPLRFGWNGDPCVPQQHPWSGANCQFDS TSFRWFIDGLDLDNQGLRGFLPDDIYKLQYLQSINLSGNSIHSSMPSTIGNISSLELLDFSYNLFNGSIPESLGQLSNLRRLNLNGNHLSGRVPAALGGR LLSGASFNFTDNSGLCGAPGLPTCGPRLTAGAKTGIAFGASFGFLLIVACVTCWCKRRQNILRAKQIAARGAPYAKKRTHLSHDIQLSRPHYNNTGHHAR TAAENGPSLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	4.5	0.9358
AT1G71740			unknown protein		Lus10042773 [exp]	6.5	0.9282
					Lus10025501 [exp]	7.1	0.9257
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	8.4	0.9339
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	8.5	0.9153
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Lus10042920 [exp]	8.7	0.8985
AT1G11655			unknown protein		Lus10001141 [exp]	8.8	0.9113
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	9.5	0.9221
AT2G21100			Disease resistance-responsive ...		Lus10025064 [exp]	9.9	0.9225
AT5G49960			unknown protein		Lus10013455 [exp]	10.4	0.9257

Compare expression of checked genes

Lus10013994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.