Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55150 52 / 4e-07 Protein of unknown function (DUF295) (.1) AT4G22660 50 / 1e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17030 49 / 3e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT3G56470 47 / 2e-05 F-box family protein (.1) AT4G22165 46 / 4e-05 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008665 [exp] 462 / 2e-162 AT5G55150 63 / 9e-11 Protein of unknown function (DUF295) (.1) Lus10004148 [exp] 80 / 5e-18 ND 41 / 5e-05 Lus10000289 [exp] 50 / 4e-07 ND / Lus10035492 [exp] 42 / 0.0005 AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10029943 [exp] 42 / 0.0009 AT1G57790 81 / 4e-16 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014500 [exp] 97 / 5e-22 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 93 / 7e-21 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.006G015601 [exp] 71 / 4e-13 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G134900 [exp] 56 / 2e-08 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 53 / 1e-07 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.001G458400 [exp] 44 / 0.0001 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.004G137700 [exp] 44 / 0.0001 AT4G22165 69 / 9e-13 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 42 / 0.0004 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10013995 pacid=23170104 polypeptide=Lus10013995 locus=Lus10013995.g ID=Lus10013995.BGIv1.0 annot-version=v1.0 ATGGCGGATTGGGCATGGCTTCCTGAAGGGATTCTCGATTTGGTACTATCGAAATTGATTCCGTTACAAGATTACATAAGCTTCAGCTGTGTGTGCAAGT CGTGGCATGACAAAGCAGAAGAGCAGAGGCACAGTCGTATCGCCTCTTGTGAAAAACAAGTCCCTCTGCTCTTGATACCGACCAAAACCCGCAGTAAGGA AACGCGGAGTCTATACAGTTCGACCAATGATAAGCTCCTCCAGTCCCAACTTCGGATCCCTTATCACAGGAGATGTTGTGGGTCATCTCATGGTTGGCTC GCTTTCGTGGAGAAAGATTATAGCGTCACGCTCTATAACCCGTTCACTCAAGCTGAAACCTCCCTCCCTCCTATCGGCAATACCGGCAATCTTCGTATAA ATCAAAGACATCACCAGAGACATTTTCCAAGCTTCGCCCACAAGGTCATCTTATCTGCGGATCCTTTCCTTCATCGTGATGAATACGTAGCCGCGGGGCT GATTACCGATCCCTTCAGAACTCTGGTCGTAATCCGACCTGGTCGAGATATACAATGGAGACGAATCACCAGCGACCATCAAAAGCTGCCCTCCGACTTG ATCTTTGACAAGAGCGGTAAATGGGTTTACACTTCCGGGGAGGACGGGTCGATCACACGCGCGAATATCGATGAACAAAATCCGGTTTCGGAGTTAGTGG TCGCACCGTGGATCCCTGCACCCGTAGGCCTGCAAATGTATTTGGTCGAAACGACGACTTGTTCGAATAATAATGGTGGAGATATGCTGATGATTTTACG AGAGTCCGAATCTCGAGACTGGCCTAATGATATCGATCGGGTTTTCGTGGTGACCAAGGACATAAAGGTGTTCAAGCTTCGAAATTCTACGCTTGTCGAG GTGGACCATCTTGACGGAAATGCGGTGTTTGTTGGAGATAACTGTTCGACTGCGGTTCTGGCAAGAGATTTCCCAGACGTCGTGGGCGACTGGATATACT ATACCGACGATTTTACAGAGTTCCCGTGTCATTACCTTTACTTAGGCCCTCGCGAGATTGGGAAATACAATGTGAAAGATAAACAATTTGATACGCACTA CGTTCCGAGTCGAAGTCAGAATCGTAAGATGCCACCTCCTGTTTGGATATTTCCTACCTTGAAACCCATCATCTCCTCGGATTTGGGTTGGAGATAG
AA sequence Show only first row Show all	>Lus10013995 pacid=23170104 polypeptide=Lus10013995 locus=Lus10013995.g ID=Lus10013995.BGIv1.0 annot-version=v1.0 MADWAWLPEGILDLVLSKLIPLQDYISFSCVCKSWHDKAEEQRHSRIASCEKQVPLLLIPTKTRSKETRSLYSSTNDKLLQSQLRIPYHRRCCGSSHGWL AFVEKDYSVTLYNPFTQAETSLPPIGNTGNLRINQRHHQRHFPSFAHKVILSADPFLHRDEYVAAGLITDPFRTLVVIRPGRDIQWRRITSDHQKLPSDL IFDKSGKWVYTSGEDGSITRANIDEQNPVSELVVAPWIPAPVGLQMYLVETTTCSNNNGGDMLMILRESESRDWPNDIDRVFVVTKDIKVFKLRNSTLVE VDHLDGNAVFVGDNCSTAVLARDFPDVVGDWIYYTDDFTEFPCHYLYLGPREIGKYNVKDKQFDTHYVPSRSQNRKMPPPVWIFPTLKPIISSDLGWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17030			F-box family protein with a do...		Lus10013995 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10024005 [exp]	1.4	0.8610
AT5G10120	EIL		Ethylene insensitive 3 family ...		Lus10024040 [exp]	9.2	0.7248
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	9.3	0.8551
AT5G14090			unknown protein		Lus10037042 [exp]	14.2	0.8410
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	14.3	0.8404
AT2G32210			unknown protein		Lus10031204 [exp]	15.9	0.8204
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	15.9	0.8079
AT3G43810		CAM7	calmodulin 7 (.1)		Lus10022589 [exp]	19.8	0.7749
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	20.6	0.8366
AT5G18600			Thioredoxin superfamily protei...		Lus10033965 [exp]	21.0	0.8131

Compare expression of checked genes

Lus10013995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.