Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33820 189 / 3e-59 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT5G46800 89 / 1e-20 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT3G21390 61 / 1e-10 Mitochondrial substrate carrier family protein (.1) AT1G79900 57 / 2e-09 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G58970 56 / 5e-09 ATUCP2 uncoupling protein 2 (.1.2) AT4G32400 56 / 6e-09 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT4G11440 55 / 1e-08 Mitochondrial substrate carrier family protein (.1) AT4G01100 54 / 2e-08 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G26200 54 / 3e-08 Mitochondrial substrate carrier family protein (.1) AT5G48970 53 / 4e-08 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015420 [exp] 235 / 2e-77 AT2G33820 415 / 7e-147 Mitochondrial substrate carrier family protein (.1) Lus10004565 [exp] 87 / 7e-20 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10000906 [exp] 86 / 1e-19 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10037544 [exp] 66 / 1e-12 AT1G79900 408 / 2e-144 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10011451 [exp] 66 / 2e-12 AT1G79900 410 / 4e-145 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 61 / 1e-10 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 59 / 6e-10 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10040709 [exp] 58 / 1e-09 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10028339 [exp] 56 / 5e-09 AT5G66380 384 / 2e-135 folate transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056000 [exp] 248 / 3e-82 AT2G33820 460 / 9e-165 Mitochondrial substrate carrier family protein (.1) Potri.004G046801 [exp] 245 / 4e-81 AT2G33820 453 / 4e-162 Mitochondrial substrate carrier family protein (.1) Potri.003G091500 [exp] 84 / 5e-19 AT5G46800 443 / 4e-158 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 82 / 2e-18 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 65 / 4e-12 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.003G053900 [exp] 60 / 2e-10 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 59 / 4e-10 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G210000 [exp] 57 / 2e-09 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 55 / 1e-08 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 54 / 1e-08 AT5G66380 463 / 8e-166 folate transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10013998 pacid=23170063 polypeptide=Lus10013998 locus=Lus10013998.g ID=Lus10013998.BGIv1.0 annot-version=v1.0 ATGGAGCAGACAAATCCAGCTTACAAGGAGTACTTAGCTGGTTTGCTCGCCGGCGTCTCCACAGTTGCTATCGGCCATCCTTTCGACACCGTCAAGGTGA AGCTCCAGAAGCACAACACCGAAGCCCACGGTGTCAAGTACAGGAATGCGTTCGATTGTACGGCTAGGATATTACAGACTGAAGGAGTTAAAGGACTCTA TAGAGGAGCAACGTCCTCTTTTGTTGGAGTGGCAGTCGAAAGCTCGCTTCTTTTCGGCATCTATTCGCGGACTAAGCAGTCTCTGCAGGTTACTGGCCTC TTCCGTGGAGGTTTGACTACATTCATGAGAGAAGCTATTGGCAATGCTGCTTTCTTCAGTGTTTATGAGTACGTCCGTTACTACATGCATCGACACCTGA AAGGCAGCGAAAATCGCAGCTATTTGATGGACATGGGAATCGGTATCGTTACTGGAGGACTTGGTGGTGTGGCGTTCTGGTCGGTCGTGCTCCCCTTTGA TGTCGCGAAAACCATTATCCAGACTTCGCCCGACAAGAATACGACGAGAAATCCATTCAGAGTTCTTAATTCTATATACAAGAGCAATGGGATGAAAGGA TGCTATACCGGTTTGGGTCCGACGATTGTGAGGGCATTTCCAGCGAATGCAGCTGCGATCGTCGCATGGGAGCTAGCAATGAAGATGCTGGGAATCGAGC GCGATTAA
AA sequence Show only first row Show all	>Lus10013998 pacid=23170063 polypeptide=Lus10013998 locus=Lus10013998.g ID=Lus10013998.BGIv1.0 annot-version=v1.0 MEQTNPAYKEYLAGLLAGVSTVAIGHPFDTVKVKLQKHNTEAHGVKYRNAFDCTARILQTEGVKGLYRGATSSFVGVAVESSLLFGIYSRTKQSLQVTGL FRGGLTTFMREAIGNAAFFSVYEYVRYYMHRHLKGSENRSYLMDMGIGIVTGGLGGVAFWSVVLPFDVAKTIIQTSPDKNTTRNPFRVLNSIYKSNGMKG CYTGLGPTIVRAFPANAAAIVAWELAMKMLGIERD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10013998 [exp]	0	1
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	2.0	0.8823
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10015420 [exp]	4.2	0.8448
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10028117 [exp]	13.4	0.8339
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10014632 [exp]	13.7	0.8389
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002901 [exp]	14.0	0.8726
AT4G15640			unknown protein		Lus10033970 [exp]	14.7	0.8789
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	15.7	0.8803
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	19.4	0.8465
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	20.0	0.8727
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10032123 [exp]	29.3	0.8425

Compare expression of checked genes

Lus10013998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.