Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60200 117 / 4e-32 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT2G28510 111 / 1e-29 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT4G21050 109 / 1e-29 DOF AtDof4,4 Dof-type zinc finger domain-containing protein (.1) AT2G37590 111 / 3e-29 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT3G45610 108 / 5e-29 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 110 / 6e-29 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G60850 109 / 1e-28 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT1G07640 108 / 2e-28 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G52440 107 / 2e-28 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT5G62940 109 / 3e-28 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014001 [exp] 112 / 6e-30 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10015425 [exp] 111 / 1e-29 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10025707 [exp] 112 / 2e-29 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10017313 [exp] 110 / 8e-29 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10042114 [exp] 103 / 1e-28 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 109 / 2e-28 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 109 / 2e-28 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10034652 [exp] 107 / 2e-28 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10003208 [exp] 110 / 3e-28 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G046100 [exp] 117 / 1e-31 AT5G60850 120 / 2e-31 OBF binding protein 4 (.1) Potri.015G048300 [exp] 115 / 5e-31 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.011G054300 [exp] 115 / 6e-31 AT5G60850 119 / 3e-31 OBF binding protein 4 (.1) Potri.011G055600 [exp] 114 / 3e-30 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.004G046600 [exp] 113 / 5e-30 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.005G149100 [exp] 112 / 1e-29 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 112 / 1e-29 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.015G077100 [exp] 111 / 2e-29 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.012G063800 [exp] 111 / 3e-29 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.012G081300 [exp] 110 / 4e-29 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10014002 pacid=23170045 polypeptide=Lus10014002 locus=Lus10014002.g ID=Lus10014002.BGIv1.0 annot-version=v1.0 ATGCCTGTTCCTCCGGCGCAGAAGTGCCCCCGCTGCGACTCCGCCAACACAAAATTCTGCTACTACAACAACTACAGCCTGACCCAGCCTCGCTACTTCT GCAAGACTTGTCGCCGCTACTGGACCCAAGGTGGGACACTCCGCAACGTCCCTGTTGGCGGAGGCTGCCCGAAGGGCAAGCGCGCCAAGCTGGCTGCTTC CTCTTCCGCTGTGGCCAGTACGTCGACAGCGTCGCCTGCTGCGACGTCAACCGGTGGTGGTGGTGGTGGTAGCAGTATGGGGGATTTGATGGCGGGTTCA TCGGCTGGCGTTGGAAGCGGGTTCGGATCTTTTTACCCGGTTCATGGAGCGGGAGGATCCGGGTTGTTGACTTCGTTCGCCGGGGTCCAGTCATTGACCA GGAATCCTCAGGCGGATTTTGTCGGGACGTCTTCGTCGGCGTTGTCGAACTTGGGTCTGCTTCAAGGGCTTGGGTCGCCGTTCGGGGCGGCGCCGTTTTA CGGTCAGGAGAATTTGATGGGGCAGCTGGGCAATTTTGGTAATTTCAGGGCTCGGCAGGTGAACAGCTGGCAGCAGGAGGGTGGTTACATCAACGCCACG GGAGCTGCCAGCGTGGCGAGTAATTCCGAAGAATAG
AA sequence Show only first row Show all	>Lus10014002 pacid=23170045 polypeptide=Lus10014002 locus=Lus10014002.g ID=Lus10014002.BGIv1.0 annot-version=v1.0 MPVPPAQKCPRCDSANTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCPKGKRAKLAASSSAVASTSTASPAATSTGGGGGGSSMGDLMAGS SAGVGSGFGSFYPVHGAGGSGLLTSFAGVQSLTRNPQADFVGTSSSALSNLGLLQGLGSPFGAAPFYGQENLMGQLGNFGNFRARQVNSWQQEGGYINAT GAASVASNSEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014002 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	2.4	0.7512
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014438 [exp]	7.3	0.7133
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	10.2	0.7517
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	17.2	0.6562
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	27.4	0.6922
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10006357 [exp]	31.3	0.6772
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	32.4	0.6289
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	35.7	0.6691
					Lus10010840 [exp]	38.2	0.6691
					Lus10023520 [exp]	40.5	0.6691

Compare expression of checked genes

Lus10014002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.