Plant FIBer expression Database

Lus10014003 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015426
[exp]
236 / 2e-81 ND 35 / 0.004
Lus10014004
[exp]
45 / 4e-06 AT4G21020 99 / 2e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Lus10015427
[exp]
45 / 5e-06 AT4G21020 99 / 1e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10014003 pacid=23170111 polypeptide=Lus10014003 locus=Lus10014003.g ID=Lus10014003.BGIv1.0 annot-version=v1.0
ATGGCCGGCTTGCCAATGATGACCAAAACCTCCGTCCTCAGCCCTTCCATGGCTTTCCCCAGGCCCCAATCGTCGCCTTCCGGCCTCCGCAGCAGCATCC
CCGCATGGCAGAAGTCGTCCCGGGTTTCATTCACTGCCTTATCGGCTGCGAAAGAGGACACTCCAAAAGGATCGGCGGACCAATTGAAGGAGAGTTTCGA
GGGAGCGGCGAGTGCAGTTTCTAAGAAGTTCGAGGAAGACAAGACGAAGACAGAGGGGGATGTCGAGAAAGCGGGTGGCAAGGCACAGGAGATACACGAG
ACGTTGAAGGAAGCGGGAGAGACAGCAGCCGATAAGGCACAGAAGGACGTGGAGGGCGCGTGGGACGCCGCGAAAGGCACGACTGATAAGATTCTGGAGA
CCTTGGGAGGCAAGGAAGGGGAGAAGTGA
AA sequence
>Lus10014003 pacid=23170111 polypeptide=Lus10014003 locus=Lus10014003.g ID=Lus10014003.BGIv1.0 annot-version=v1.0
MAGLPMMTKTSVLSPSMAFPRPQSSPSGLRSSIPAWQKSSRVSFTALSAAKEDTPKGSADQLKESFEGAASAVSKKFEEDKTKTEGDVEKAGGKAQEIHE
TLKEAGETAADKAQKDVEGAWDAAKGTTDKILETLGGKEGEK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10014003
[exp]
0 1
AT3G29590 AT5MAT HXXXD-type acyl-transferase fa... Lus10041656
[exp]
1.7 0.9016
AT4G33860 Glycosyl hydrolase family 10 p... Lus10033786
[exp]
3.7 0.8936
AT1G24110 Peroxidase superfamily protein... Lus10004234
[exp]
3.9 0.8552
AT5G56170 LLG1 LORELEI-LIKE-GPI-ANCHORED PROT... Lus10000405
[exp]
6.6 0.7841
AT5G45890 SAG12 senescence-associated gene 12 ... Lus10042693
[exp]
8.5 0.7766
AT3G47430 PEX11B peroxin 11B (.1) Lus10038925
[exp]
11.2 0.8407
AT4G12300 CYP706A4 "cytochrome P450, family 706, ... Lus10024577
[exp]
11.6 0.8055
AT4G21200 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELL... Lus10018372
[exp]
15.0 0.8036
AT2G23620 ATMES1 ARABIDOPSIS THALIANA METHYL ES... Lus10009203
[exp]
17.1 0.8382
AT5G55570 unknown protein Lus10028870
[exp]
17.5 0.8302

Lus10014003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.