Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21020 61 / 9e-11 Late embryogenesis abundant protein (LEA) family protein (.1) AT5G44310 50 / 9e-07 Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015427 [exp] 283 / 6e-96 AT4G21020 99 / 1e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G054200 [exp] 107 / 1e-27 AT4G21020 96 / 1e-23 Late embryogenesis abundant protein (LEA) family protein (.1) Potri.004G046000 [exp] 90 / 3e-21 AT4G21020 64 / 4e-12 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014004 pacid=23170051 polypeptide=Lus10014004 locus=Lus10014004.g ID=Lus10014004.BGIv1.0 annot-version=v1.0 ATGGCCATGATTTCGAGAAGCGCCATGTTCTGCCTCTCTAAAGCTTCCCAGCAATCTGCAGCCTTCTTCCATGGCGGCTCTGGTGTCTGGCCCAAGTTCA CCCGAGTTTCGTTCTCGTCCTCAGCCTCGAAATCGACCTACAACCAGGGTTGGAATGCGGCGGACCACAACAAAGACTCGGACAACTTCACTGACAAGGT GAACCGGAAGGCGGAGCAGGCGAAAAACAAGTCCGACGACCTAACAGATAAGGCCAAGGAACGAGCGGAGGAAATGAAGGAAAGCGGGAAAGAGAACGCG CACGAGACCAAGGAGAGCGCGAAGCACGCCACACGAGCGGCTTCTGAGAAGGTGAAGGAAGGGGCGTACAAGGCGGCGGAAGCCACCGACAGCACCAAGG AGCGGGCCAAGGACTACGCTTACGAAACCAAGGATAAGGCCAAGGAAACTGGAGAAAAGGCGGCCGACAAGGCGAAAGAGGCAAAAGAGACGGTGAAGGA TTATGCGTATGACGCTAAGGAGAAGGCGAAGGAGACTGGGGAAAAGGCGGCCGACAAGGCGAAGGAGACGGCGGAGAGGACGAAGGATGCAGCTGGGTCG GCCACTGAGAAGGCGAAAGAGGCGGTGAAGGGCGCATGGGAGGCGGCGAAGGATACGACGAACAAGATCAAGGAGACGGTGGTTGGGAAGGATGATAAGG ATGATGATTTGACGAGCAGTGGGACTAGTAGCGATGAGGATGATGATCGGAAAGGGTGGAAGACTATGGATGCTGATGTGGCGGATCTCAGGCGACGTGC CGGTGGCGGTGGTGGGATAGGGAAGGATGGTAAGAAGTAG
AA sequence Show only first row Show all	>Lus10014004 pacid=23170051 polypeptide=Lus10014004 locus=Lus10014004.g ID=Lus10014004.BGIv1.0 annot-version=v1.0 MAMISRSAMFCLSKASQQSAAFFHGGSGVWPKFTRVSFSSSASKSTYNQGWNAADHNKDSDNFTDKVNRKAEQAKNKSDDLTDKAKERAEEMKESGKENA HETKESAKHATRAASEKVKEGAYKAAEATDSTKERAKDYAYETKDKAKETGEKAADKAKEAKETVKDYAYDAKEKAKETGEKAADKAKETAERTKDAAGS ATEKAKEAVKGAWEAAKDTTNKIKETVVGKDDKDDDLTSSGTSSDEDDDRKGWKTMDADVADLRRRAGGGGGIGKDGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21020			Late embryogenesis abundant pr...		Lus10014004 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Lus10039233 [exp]	1.0	0.9441
AT5G27260			unknown protein		Lus10007133 [exp]	2.0	0.8780
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10004471 [exp]	5.5	0.7913
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	8.2	0.7665
AT5G53820			Late embryogenesis abundant pr...		Lus10007566 [exp]	8.3	0.8151
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	9.6	0.8151
					Lus10033071 [exp]	10.7	0.8151
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	11.7	0.8151
					Lus10003695 [exp]	12.7	0.8151
					Lus10003774 [exp]	13.6	0.8151

Compare expression of checked genes

Lus10014004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.