Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28260 384 / 2e-120 Telomerase activating protein Est1 (.1.2) AT5G19400 176 / 3e-45 SMG7 Telomerase activating protein Est1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015430 [exp] 1167 / 0 AT1G28260 483 / 5e-158 Telomerase activating protein Est1 (.1.2) Lus10009689 [exp] 179 / 2e-46 AT5G19400 738 / 0.0 Telomerase activating protein Est1 (.1.2.3) Lus10036041 [exp] 127 / 2e-31 AT5G19400 416 / 3e-136 Telomerase activating protein Est1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053800 [exp] 578 / 0 AT1G28260 560 / 0.0 Telomerase activating protein Est1 (.1.2) Potri.004G045300 [exp] 549 / 0 AT1G28260 555 / 0.0 Telomerase activating protein Est1 (.1.2) Potri.001G275400 [exp] 186 / 1e-48 AT5G19400 759 / 0.0 Telomerase activating protein Est1 (.1.2.3) Potri.006G038500 [exp] 182 / 2e-47 AT5G19400 620 / 0.0 Telomerase activating protein Est1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10374 [flax] [poplar] EST1 Telomerase activating protein Est1
Representative CDS sequence Show only first row Show all	>Lus10014007 pacid=23170125 polypeptide=Lus10014007 locus=Lus10014007.g ID=Lus10014007.BGIv1.0 annot-version=v1.0 ATGGAAGCTAAGGATAACCATCAAAGGGAGAAATCGCCTCTTCTCAGCAAGGTAGCTGATGTGGAGAAACACTTTCTAGGGAAGATCCATGCCGAAATCC TATGGAATTTTGATGTTCAACTTCTGTATAAACAAGTCTGTTCTTGCTACGAGCAAACTCTTCTAAGAGGTGGTGATGACACACTTCAAGAGCTGCAAGA TGTTGAGTACTCTCTGTGGAAGCTTCACTACCGAGTCATCGATGAATTTCGCAAGCGAACCAAGCGACAGGTTTCTTCCGATACCAGCATCGAAGGGTTC AAGTCATTTCTATCACAAGCCAGTGGCTTTTATCTGAACCTGATAGTCAAGCTTAGGAAATGCTACGATGGTCACCTGAAGCTTCAGTTCTTGTGGCACC GGTTCTTGGTTTGTCTCGGTGATCTCGCAAGGTACAACGAGCAGTGCGAGGAACCGGGTCGGCAGAACTGGTCAGTTCCTGCTAGCCATTACTCAGAAGC TGCCACGGTTTGGCCTTACAATGGCAGCCCTCATAACCAGTTGGCGGTGTTGGCTACGTACATTGGCGACGAGTTCCTGGCTTTGTACCATTGCATAAGG AGCTTAGCTGTTAAGGAGCCTTTCCCTGATGCATGGAATAACCTTCTCTTGCTGTGTGAAAAAAACAGGTCATCCTCGTTACCTTTCGTGTCACATGATG TCGGTTTCGACTTCACAGAGCCATCATCTAGTGTTTGGAATAATGATGATGAGTCCACTGGGGCATCATCTTTGTGGCTTCTTATGATTCGAGTCGTAAG CTTCTTCTTCCTCGATTCGAGTTTTGAGGAGTTCCCTTGTACTTTTGCATCTACTGTCAAAGAGCTGGAAATATTTCTCTCAATGGAATCCTACCAGCAT ACGGATTCAGCTAAACGAGGGCCTCTCCGAACCCTCCAACTCGTCTGTGTACTCATTTTCCTAATCGAACATCTGAGAAACAGTACTAAGGAAGTCAACA GTTCGATGCAATGGGCGTTGACTGCTACATTCATCGCTATGGGACGCATCGTAGACAGATGTTCTAAGGCTAATAATCCGGTCTCCTCGTGCATACTGTT GCCAGCTGTACTCATCTTCATCGAGTGGATGGTATCCATCTTCGACAAAGTCGAAGCACAAGCTTCTTCGGACGATAGAGCCACGAGTGCCATGTCTTAC TTCTTCAGCTCCTTATCTGAGCTACTCAAGAAGCTCAATGGCTGCTCTGAAAAGAATGCAGTACATGAAGGTGGTCCGGTCACTCGTGCTCTGTGGGAAG ACTGCGAGTTGAGAGGCTTTGCACCTTTAGCTCTTGCTCATGCAGCGCTGGATTTCTCGACTGATCACCATGGTCAGGTGGATGGTTTCGAGCGTGGGGA AAAGTGTCGAGTTAGACGAATAGTCGATGCTGGCAAGAGGCTTACTGACAAGACGTCGAGTACTCGAAATGGGAAGAAAAAGTGTGATGCTTTATTGGAA GAGGAAGAAGTCATTCTTTTCAAGCCTCTCACCAGGCATAACTCTGCACCTATTTACAACTCCTTTCACAACTATGACATTGTTTCTTCTTCTTCTTTGG ATTCTTCGAGGGAATCTAGTACTAACCAGGCTGACGAGTGCCTTAGGCGCGCAACATCCTTACTGATAGCACAGAATCATGCTAATCAAGGAGACAATGG CGAATTCGCATTCCATTCCGGTCTCGCGGATTTCAGGCGTAGCAAACAGCAAGAGCAGTCCTTGAATAGCACGGTAACCAGCCTGTTTTCGGAGCCCACC ATAGCAGCGGGCCCTCCCTCGCTGAACGCCTGGGTGGCCCCATCGTCCTCCAGCCACGAGAAGACGAAGGGTAAGCACACATTGCCACCCATCGACGAAC GCTTGAGTGAGCTTGCGATCAGCGAACCGGACCACTACTCGCCTCCATTACCTTCAGCACCATTACTGCCGGATGATGCACCATGGGTGAACGACAACAA CGGTTGTTGCAACATCCTGGTCCCTCGTTTCCTTGATCATCAACATAGACCGGCTGGCTTTTCAAACTGGGGGCTGGCCGATGGATATACATATGCACCA CAGCAGCCACGTAGGATGACTTCTTCCGAGTGGCTAAGGCAGTACAGGGAGAATCAAGCCAGCAACAACGGCCTTTCTTGGCAGCCAAGTCATCATCTTT CTAGTCATGTTCCTCCTACACCATCCATGCCATTGATGTATCCAGGGCTGCCACCGATGATGAGTCGTGGCTACTATGATGAACATAGTAAGCAGCAGAG CTCTTATAACTGGGACGGCTCTTTGAACGAGCCGGAGCCATTGCTGCAGTACCTTAAGGAGAAAGAATGGCTGTTCTACCACCAGCAAGGTTCAAGCTTT AGAGGTCCCACTTTCATGGGCAGCTAA
AA sequence Show only first row Show all	>Lus10014007 pacid=23170125 polypeptide=Lus10014007 locus=Lus10014007.g ID=Lus10014007.BGIv1.0 annot-version=v1.0 MEAKDNHQREKSPLLSKVADVEKHFLGKIHAEILWNFDVQLLYKQVCSCYEQTLLRGGDDTLQELQDVEYSLWKLHYRVIDEFRKRTKRQVSSDTSIEGF KSFLSQASGFYLNLIVKLRKCYDGHLKLQFLWHRFLVCLGDLARYNEQCEEPGRQNWSVPASHYSEAATVWPYNGSPHNQLAVLATYIGDEFLALYHCIR SLAVKEPFPDAWNNLLLLCEKNRSSSLPFVSHDVGFDFTEPSSSVWNNDDESTGASSLWLLMIRVVSFFFLDSSFEEFPCTFASTVKELEIFLSMESYQH TDSAKRGPLRTLQLVCVLIFLIEHLRNSTKEVNSSMQWALTATFIAMGRIVDRCSKANNPVSSCILLPAVLIFIEWMVSIFDKVEAQASSDDRATSAMSY FFSSLSELLKKLNGCSEKNAVHEGGPVTRALWEDCELRGFAPLALAHAALDFSTDHHGQVDGFERGEKCRVRRIVDAGKRLTDKTSSTRNGKKKCDALLE EEEVILFKPLTRHNSAPIYNSFHNYDIVSSSSLDSSRESSTNQADECLRRATSLLIAQNHANQGDNGEFAFHSGLADFRRSKQQEQSLNSTVTSLFSEPT IAAGPPSLNAWVAPSSSSHEKTKGKHTLPPIDERLSELAISEPDHYSPPLPSAPLLPDDAPWVNDNNGCCNILVPRFLDHQHRPAGFSNWGLADGYTYAP QQPRRMTSSEWLRQYRENQASNNGLSWQPSHHLSSHVPPTPSMPLMYPGLPPMMSRGYYDEHSKQQSSYNWDGSLNEPEPLLQYLKEKEWLFYHQQGSSF RGPTFMGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	0	1
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	1.0	0.9397
AT2G39950			unknown protein		Lus10028266 [exp]	3.0	0.9373
AT1G28260			Telomerase activating protein ...		Lus10015430 [exp]	3.5	0.9313
AT1G68490			unknown protein		Lus10038934 [exp]	4.0	0.9218
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	4.2	0.9393
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	4.5	0.9339
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	4.9	0.9342
AT4G10730			Protein kinase superfamily pro...		Lus10017326 [exp]	5.5	0.8951
AT3G53630			unknown protein		Lus10024421 [exp]	7.9	0.9201
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10005518 [exp]	8.9	0.9121

Compare expression of checked genes

Lus10014007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.