Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77170 73 / 1e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13880 73 / 1e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 69 / 3e-14 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G56550 68 / 4e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G04840 67 / 7e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 67 / 7e-14 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 67 / 8e-14 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 67 / 8e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18840 67 / 1e-13 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G04370 66 / 3e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004114 [exp] 167 / 3e-54 AT3G13880 96 / 5e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019213 [exp] 165 / 6e-49 AT2G21090 376 / 2e-123 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004303 [exp] 148 / 2e-45 AT2G21090 146 / 1e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003383 [exp] 147 / 2e-45 AT2G21090 145 / 1e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012796 [exp] 66 / 3e-13 AT2G36980 516 / 1e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 65 / 8e-13 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031661 [exp] 65 / 9e-13 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029884 [exp] 64 / 1e-12 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 64 / 2e-12 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G064301 [exp] 71 / 1e-16 AT2G34400 170 / 7e-51 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G041650 [exp] 73 / 3e-16 AT2G34400 226 / 6e-70 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G108000 [exp] 73 / 9e-16 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G145514 [exp] 72 / 1e-15 AT2G34400 472 / 4e-162 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G244500 [exp] 71 / 6e-15 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 71 / 7e-15 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G147873 [exp] 67 / 7e-15 AT2G34400 168 / 5e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G164100 [exp] 70 / 8e-15 AT1G77170 553 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 70 / 9e-15 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068900 [exp] 70 / 9e-15 AT3G20730 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014009 pacid=23170073 polypeptide=Lus10014009 locus=Lus10014009.g ID=Lus10014009.BGIv1.0 annot-version=v1.0 ATGCCTGAACGAAATCTCGTCAGCTACAACTCAATGATTTCGGGGCTTTCTCGTGGTGGGTGTTACACGGAGGCGTTGGGTATGTTCATGAGGTTGCAGG AAGATTGTGTTGGTGGGTTTTGTTTGGATGAGTTTACTGTTGCGAGTGTGGTGAGTTGTTGTGCGAGCTTTCGTGGATTGGGACTGGTTCGTCAGCTGCA TGGTGTGGGGTTAGTTCTTGGGCATTTGGTGTTGCTAAATTCCTTGATTGATGCCTATGGGAAATGTGGAGAATCCGATTTTAGTCTCGGTGTGTTTTGC TGGATGAACGAAAGGGATGTTGTTTCATGGACATCAATAGTGGCTGCTTATACTCTCGATCATCCTAACTGGATGAAGCTATTGGAATTTTCAAACAGTG CCATATGGGAGCACTGTTGCTTGGACTAG
AA sequence Show only first row Show all	>Lus10014009 pacid=23170073 polypeptide=Lus10014009 locus=Lus10014009.g ID=Lus10014009.BGIv1.0 annot-version=v1.0 MPERNLVSYNSMISGLSRGGCYTEALGMFMRLQEDCVGGFCLDEFTVASVVSCCASFRGLGLVRQLHGVGLVLGHLVLLNSLIDAYGKCGESDFSLGVFC WMNERDVVSWTSIVAAYTLDHPNWMKLLEFSNSAIWEHCCLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10014009 [exp]	0	1
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10020683 [exp]	7.1	0.7763
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	12.2	0.8024
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031458 [exp]	13.4	0.7934
AT2G45990			unknown protein		Lus10036369 [exp]	16.8	0.8034
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	21.6	0.7781
AT5G04980			DNAse I-like superfamily prote...		Lus10008934 [exp]	24.4	0.7761
AT1G61780			postsynaptic protein-related (...		Lus10002066 [exp]	26.2	0.7983
AT4G21192			Cytochrome c oxidase biogenesi...		Lus10019246 [exp]	30.6	0.7825
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10006383 [exp]	34.9	0.7868
AT4G00290			Mechanosensitive ion channel p...		Lus10005121 [exp]	35.0	0.7719

Compare expression of checked genes

Lus10014009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.