Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39420 187 / 4e-56 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006814 [exp] 267 / 1e-86 AT4G39420 522 / 3e-163 unknown protein Lus10005786 [exp] 247 / 6e-77 AT4G39420 3258 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G078650 [exp] 221 / 8e-68 AT4G39420 3458 / 0.0 unknown protein Potri.005G086100 [exp] 207 / 6e-63 AT4G39420 3493 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014011 pacid=23170034 polypeptide=Lus10014011 locus=Lus10014011.g ID=Lus10014011.BGIv1.0 annot-version=v1.0 ATGGAGATGATTGCACGGTGGAAGGTAGATAATTTGGACCTCAAAACTGTGGTTAAAGATGCACTTCACGCTGGCCGTCTGCCTCTAGCAGTTCTGCAAT TGCACTTTCATCGTTCGAAAGAGATGAGCAGTGATAAGGAACCTCCTGATACTTTCGGCGAAGTTCGAGAGATTGGAAGAGCTATTGCTTACGACTTATT TCTAAAGGGAGAAACCAAACTGGCTATTGCAACTTTGCAAAGGCTAGGAGAAGAAGTTGAAAACTGTCTTAAGCAGTTGTTATTTGGCACCGTGAGGAGG TCTCTGCGAGTTCAAGTGTCAGAGGAAATGAGAAGATATAGTTACCTTGGAACATACGAGTGGAAAATTTTAGAGAAGATATCACTTATTGAGGCGTAG
AA sequence Show only first row Show all	>Lus10014011 pacid=23170034 polypeptide=Lus10014011 locus=Lus10014011.g ID=Lus10014011.BGIv1.0 annot-version=v1.0 MEMIARWKVDNLDLKTVVKDALHAGRLPLAVLQLHFHRSKEMSSDKEPPDTFGEVREIGRAIAYDLFLKGETKLAIATLQRLGEEVENCLKQLLFGTVRR SLRVQVSEEMRRYSYLGTYEWKILEKISLIEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39420			unknown protein		Lus10014011 [exp]	0	1
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015332 [exp]	1.4	0.9100
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016374 [exp]	15.9	0.9005
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	20.1	0.8562
AT5G27970			ARM repeat superfamily protein...		Lus10004117 [exp]	20.9	0.8991
AT2G21390			Coatomer, alpha subunit (.1)		Lus10035884 [exp]	21.3	0.8969
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	23.6	0.8947
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10005090 [exp]	29.7	0.8920
AT1G14100		FUT8	fucosyltransferase 8 (.1)		Lus10041641 [exp]	35.2	0.8701
AT5G27970			ARM repeat superfamily protein...		Lus10004116 [exp]	36.3	0.8891
AT3G12590			unknown protein		Lus10005160 [exp]	38.1	0.8802

Compare expression of checked genes

Lus10014011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.