Plant FIBer expression Database

Lus10014012 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39420 173 / 4e-50 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005786
[exp]
307 / 1e-96 AT4G39420 3258 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G086100
[exp]
210 / 5e-63 AT4G39420 3493 / 0.0 unknown protein
Potri.007G078650
[exp]
205 / 4e-61 AT4G39420 3458 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10014012 pacid=23170085 polypeptide=Lus10014012 locus=Lus10014012.g ID=Lus10014012.BGIv1.0 annot-version=v1.0
ATGTTGCTTGCCTGTCACGGATATCTTCATTCTACAAAGTTAAGGCATGAAACTTATGACCAAATCTCACCAAAGGGTTCAGCATTTCATCCGGCATCTT
ATGAAGATGAAAGAGTGGAGTCCCTAGCTAGATCATTAGCTGATGAGTATGTGAATCGTGATTATGCAAGAGCTGATAAGTTAAAGCAGAATCCAAAGTC
AATCAATGGTGAACGACCTTCTCGAGCTCTCATGCTAGTCCTGCATCATTTGGAAAAGGCTAGTCTTCCGACAATAACAGATGCAAAGACTTGTGGATCA
TGGTTATTAACTGGTAATGGTGATGGGACTGAATTAAGATCTCAACAAAAAGCTGCAAGTCAACACTGGAATCTAGTTACTGTTTTCTGTCAAATGCATC
AGCTTCCATTGAGCATGAAGTATCTTGCCTTCTTAGCCAGAGACAATGACTGGGCCTCCAAGGAGTTTAGTGATGCTCGTCTCAAGATTCATGTAAACAT
TGAACGGGACGCAAAGGCGGTAGCAGCCCACATCAACAGAGGTCATACACAACTGGCTATTAAAGGCTCCATCGTCTAG
AA sequence
>Lus10014012 pacid=23170085 polypeptide=Lus10014012 locus=Lus10014012.g ID=Lus10014012.BGIv1.0 annot-version=v1.0
MLLACHGYLHSTKLRHETYDQISPKGSAFHPASYEDERVESLARSLADEYVNRDYARADKLKQNPKSINGERPSRALMLVLHHLEKASLPTITDAKTCGS
WLLTGNGDGTELRSQQKAASQHWNLVTVFCQMHQLPLSMKYLAFLARDNDWASKEFSDARLKIHVNIERDAKAVAAHINRGHTQLAIKGSIV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G39420 unknown protein Lus10014012
[exp]
0 1
AT5G43900 XI-6, XI-2, ATM... MYOSIN XI-6, MYOSIN X1 2, ARAB... Lus10022850
[exp]
50.4 0.7853
AT5G28850 Calcium-binding EF-hand family... Lus10029614
[exp]
73.4 0.7511
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.... Lus10037346
[exp]
164.3 0.7381
AT5G11720 Glycosyl hydrolases family 31 ... Lus10000780
[exp]
177.2 0.7364
AT2G28520 VHA-A1 vacuolar proton ATPase A1 (.1) Lus10018129
[exp]
182.9 0.7422
AT3G44730 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTE... Lus10032897
[exp]
228.4 0.7175
AT4G24520 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTA... Lus10032842
[exp]
260.7 0.7131
AT5G20490 XI-17, ATXIK, X... MYOSIN XI-17, MYOSIN XI K, Myo... Lus10021570
[exp]
274.4 0.7014

Lus10014012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.