Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34700 132 / 1e-38 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G28290 125 / 1e-34 AGP31 arabinogalactan protein 31 (.1.2) AT2G33790 118 / 2e-32 ATAGP30 arabinogalactan protein 30 (.1) AT5G05500 71 / 4e-15 MOP10 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G47540 61 / 3e-11 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G47530 47 / 2e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G18596 47 / 2e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G45880 46 / 3e-06 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015434 [exp] 264 / 3e-89 AT1G28290 135 / 1e-39 arabinogalactan protein 31 (.1.2) Lus10009837 [exp] 74 / 4e-16 AT5G05500 171 / 1e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10040948 [exp] 74 / 5e-16 AT5G05500 176 / 9e-57 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10017440 [exp] 67 / 2e-13 AT5G05500 128 / 7e-38 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10007515 [exp] 54 / 8e-09 AT5G05500 127 / 3e-37 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10041926 [exp] 54 / 1e-08 AT4G02270 100 / 5e-26 root hair specific 13 (.1) Lus10005539 [exp] 52 / 1e-07 AT4G02270 103 / 1e-27 root hair specific 13 (.1) Lus10013419 [exp] 51 / 2e-07 AT4G02270 118 / 3e-33 root hair specific 13 (.1) Lus10042838 [exp] 39 / 0.0009 AT1G29140 115 / 6e-33 Pollen Ole e 1 allergen and extensin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053600 [exp] 176 / 8e-55 AT2G34700 139 / 5e-41 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.004G044700 [exp] 173 / 7e-54 AT2G34700 142 / 8e-43 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.010G185400 [exp] 79 / 5e-18 AT5G05500 166 / 8e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.008G072000 [exp] 69 / 3e-14 AT5G05500 152 / 5e-47 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G201900 [exp] 50 / 1e-07 AT2G47540 160 / 1e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.006G119100 [exp] 47 / 3e-06 AT3G09925 180 / 7e-58 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G093100 [exp] 42 / 7e-05 AT4G08685 199 / 3e-66 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G201800 [exp] 41 / 0.0002 AT4G02270 118 / 1e-33 root hair specific 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10014013 pacid=23170074 polypeptide=Lus10014013 locus=Lus10014013.g ID=Lus10014013.BGIv1.0 annot-version=v1.0 ATGATGTACTGTGACGTCTGTGGATTCATGATGAATGCCCACCCTCCTTCCCCCCACGGCCACCACCACCACGCGCCCACCCCTTCCCCACACTCCCCCG GCCACCACCACCACCACCGTCACCCAAACAAAACTCACGCGCCTACCCCTTCTCCTACTGCCTCTCCTCCGGCCAAGTCTCCCCACCACGCGCCGTCTCC CCACGCCCCGCTCCCCCACACTCCAGCTCCAGCTCCCCACCATGCCGCGCCGCCGGCCCACTCCCCTGTTTCGCCCCCACACGCACCCTCCCCTGCTCCT TCCGCCGGCCGCTACCCGTTCCAGAGGTTCCTCGTCGCCGTTCAGGGAGTCGTCTACTGCAAGCCGTGCAAGTACTCCGGCGTCGATACCCTCCTTGGCG CCACTCCCGTCCTCGGTGCGACGGTAAAGTTACAGTGCAACAATAGCAGAGTGCCTTTGGTGTTCAAGGCCACGACGGACAAGAACGGCTACTTCAAGGT CAAGGCTCCCAAGACCATCACCAACTATGGTGTCCACAAGTGCAAGGCCTCGCTCGAGTCGTCCCCCGACGCCAAATGCTCGTCCAAGTCCACACTCCAC GGTGGGATCGCTGGTGGAATCCTCCGCGTTGACAAGAAGTTCGTTGAGTCGAACCAGACCTACGTGCTGTTCACTGTCGGACCGTTTGCTTTCGAGCCCA AGTGTCATTAA
AA sequence Show only first row Show all	>Lus10014013 pacid=23170074 polypeptide=Lus10014013 locus=Lus10014013.g ID=Lus10014013.BGIv1.0 annot-version=v1.0 MMYCDVCGFMMNAHPPSPHGHHHHAPTPSPHSPGHHHHHRHPNKTHAPTPSPTASPPAKSPHHAPSPHAPLPHTPAPAPHHAAPPAHSPVSPPHAPSPAP SAGRYPFQRFLVAVQGVVYCKPCKYSGVDTLLGATPVLGATVKLQCNNSRVPLVFKATTDKNGYFKVKAPKTITNYGVHKCKASLESSPDAKCSSKSTLH GGIAGGILRVDKKFVESNQTYVLFTVGPFAFEPKCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34700			Pollen Ole e 1 allergen and ex...		Lus10014013 [exp]	0	1
					Lus10040587 [exp]	3.6	0.9262
AT3G45230			hydroxyproline-rich glycoprote...		Lus10041306 [exp]	5.8	0.9206
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10041023 [exp]	8.1	0.8787
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	8.8	0.9182
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10018016 [exp]	9.5	0.9105
AT4G22560			unknown protein		Lus10028927 [exp]	10.0	0.9136
AT1G22030			unknown protein		Lus10015473 [exp]	11.0	0.9072
					Lus10041251 [exp]	12.3	0.9160
AT5G03080			Phosphatidic acid phosphatase ...		Lus10019919 [exp]	12.5	0.9129
AT2G01610			Plant invertase/pectin methyle...		Lus10038645 [exp]	13.9	0.9112

Compare expression of checked genes

Lus10014013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.