Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09630 486 / 1e-173 Ribosomal protein L4/L1 family (.1.2) AT5G02870 479 / 8e-171 Ribosomal protein L4/L1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026476 [exp] 591 / 0 AT3G09630 678 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10019903 [exp] 590 / 0 AT3G09630 674 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10019904 [exp] 562 / 0 AT3G09630 488 / 3e-173 Ribosomal protein L4/L1 family (.1.2) Lus10014431 [exp] 234 / 3e-78 AT3G09630 175 / 1e-54 Ribosomal protein L4/L1 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132450 [exp] 513 / 0 AT3G09630 617 / 0.0 Ribosomal protein L4/L1 family (.1.2) Potri.006G132551 [exp] 513 / 0 AT3G09630 612 / 0.0 Ribosomal protein L4/L1 family (.1.2) Potri.016G084400 [exp] 490 / 6e-175 AT3G09630 585 / 0.0 Ribosomal protein L4/L1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [flax] [poplar] Ribosomal_L4 Ribosomal protein L4/L1 family
Representative CDS sequence Show only first row Show all	>Lus10014014 pacid=23156767 polypeptide=Lus10014014 locus=Lus10014014.g ID=Lus10014014.BGIv1.0 annot-version=v1.0 ATGTGTCGTGGTGGACGCATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACAGGAGGATCAACGTCAACCAGAAGCGATACGCTGTCGTTTCCGCGA TCGCCGCATCTGCCGTGCCTTCTCTGGTGATGGCGCGCGGCCACCGGATTGACACTGTTCCTGAATTGCCCCTGGTGATCAACGATTCCGCGGAGGGTGT CGAGAAGACTTCCACCGCCATCAAGGTGTTGAAGGAGATCGGAGCTTATGCCGACGCCGAGAAGGCCAAGGACAGCCAGGCGATCCGCGCCGGGAAAGGT AAGGCTAGGAACCGGAGATACGTATCTCGTAAGGGACCATTGGTTGTTTACGGTAATGAAGGTGCTCAGCTGGTTAAGGCCTTCCGTAACATTCCTGGTG TGGAGATCGCCAATGTGGAACGCCTCAACCTTTTGAAGCTGGCTCCCGGTGGTCATTTGGGACGGTTTGTGATCTGGACCAAGTCCGCTTTTGAGAAGCT TGACTCGATCTATGGATCGTTTGAGAAGGCTTCGGAGAAGAAGAATGGTTATGTCTTGCCTAGGGCCAAGATGGTGAATGCTGACCTTGCCAGGATCATC AACTCCGATGAGGTTCAGTCTGTGGTGAAGCCCGTCAACAAAGAAGTGAAGAGGGCGACGCTGAAGAAGAATCCATTGAAGAACTTGAACGTGATGCTTA AGCTTAACCCGTATGCTAAGACTGCTAGGAGAATGTCATTGTTGGCTGACGCCCAGCGCGTTAAATCTAAGAAGGAGAAGCTTGACAGGAAGAGGACTCC CATTAGCAAGGAGGAAGCAAGTGCAATCAAGGCTGCTGGGAAGGCATGGTACAAAACAATGGAATCAGAAAGCGATTACTCAGAGTTCGAGATCTTCTCC AAATGGCTGGGTGCATCGCAGTAA
AA sequence Show only first row Show all	>Lus10014014 pacid=23156767 polypeptide=Lus10014014 locus=Lus10014014.g ID=Lus10014014.BGIv1.0 annot-version=v1.0 MCRGGRMFAPTKIWRRWHRRINVNQKRYAVVSAIAASAVPSLVMARGHRIDTVPELPLVINDSAEGVEKTSTAIKVLKEIGAYADAEKAKDSQAIRAGKG KARNRRYVSRKGPLVVYGNEGAQLVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKASEKKNGYVLPRAKMVNADLARII NSDEVQSVVKPVNKEVKRATLKKNPLKNLNVMLKLNPYAKTARRMSLLADAQRVKSKKEKLDRKRTPISKEEASAIKAAGKAWYKTMESESDYSEFEIFS KWLGASQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014014 [exp]	0	1
AT3G11250			Ribosomal protein L10 family p...		Lus10009887 [exp]	1.4	0.9584
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	2.8	0.9440
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	3.9	0.9268
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	4.2	0.9159
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	4.6	0.9429
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	5.3	0.9401
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	5.7	0.9168
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	7.9	0.8737
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	8.8	0.9042
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	8.8	0.9198

Compare expression of checked genes

Lus10014014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.