Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53470 151 / 6e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019901 [exp] 228 / 7e-78 AT3G53470 151 / 5e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084000 [exp] 167 / 3e-54 AT3G53470 142 / 2e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014016 pacid=23156780 polypeptide=Lus10014016 locus=Lus10014016.g ID=Lus10014016.BGIv1.0 annot-version=v1.0 ATGAATATTCATGCTCGAATCCGATCGATCACAACAACAGCCTGCGATCCAGCAACTCACTCCGCCACATTACCCTCACTCCTCAAAAAGTCGCCGTCTA CCTCGTCATTTTTCACTCCACCTCAGTGTTCCAAACGGAATCCTCCTCAAGAACCTCAACGCAACGGCGACGGTGGCAAGTCGTCGACAGACTGGGACAA GGCATGGTCAAGCTTCAAGAAGCAAGGCAAGAAGACCTTGTTCTCGCAGTTCTCTCCAAACAAATATGTGACCTGGAACCCTAAGCCGTCGGACTACCCG CTTTCGGAAGAGGTTGATCCAATCAAGAGGACTGAAAGATCAAACCTTAGGTTGTGGACAAGTCCAGGGTTCACCCTGGTTGGGGCCATTGTATTAGTCT CCTTCCTCCTCATTTACACCATTCTTGCTCCCGTCAAGTGA
AA sequence Show only first row Show all	>Lus10014016 pacid=23156780 polypeptide=Lus10014016 locus=Lus10014016.g ID=Lus10014016.BGIv1.0 annot-version=v1.0 MNIHARIRSITTTACDPATHSATLPSLLKKSPSTSSFFTPPQCSKRNPPQEPQRNGDGGKSSTDWDKAWSSFKKQGKKTLFSQFSPNKYVTWNPKPSDYP LSEEVDPIKRTERSNLRLWTSPGFTLVGAIVLVSFLLIYTILAPVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53470			unknown protein		Lus10014016 [exp]	0	1
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	2.6	0.9361
AT2G12400			unknown protein		Lus10008813 [exp]	3.9	0.9300
AT5G59250			Major facilitator superfamily ...		Lus10016505 [exp]	3.9	0.9147
AT3G53470			unknown protein		Lus10019901 [exp]	4.9	0.9238
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	5.8	0.9332
AT2G35260			unknown protein		Lus10040089 [exp]	9.2	0.9143
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	9.9	0.9322
AT2G23820			Metal-dependent phosphohydrola...		Lus10015497 [exp]	10.2	0.8958
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	11.1	0.9303
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	11.7	0.9046

Compare expression of checked genes

Lus10014016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.