Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37240 307 / 4e-106 Thioredoxin superfamily protein (.1) AT5G65840 99 / 2e-24 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019900 [exp] 230 / 6e-76 AT2G37240 214 / 7e-70 Thioredoxin superfamily protein (.1) Lus10011727 [exp] 87 / 2e-20 AT5G65840 297 / 1e-101 Thioredoxin superfamily protein (.1) Lus10030907 [exp] 71 / 8e-14 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10030582 [exp] 71 / 9e-14 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10029111 [exp] 65 / 8e-12 AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1) Lus10013051 [exp] 65 / 8e-12 AT2G37240 60 / 4e-10 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133100 [exp] 322 / 6e-112 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1) Potri.014G012100 [exp] 89 / 6e-21 AT5G65840 321 / 7e-111 Thioredoxin superfamily protein (.1) Potri.008G113000 [exp] 65 / 5e-12 AT2G37240 62 / 1e-10 Thioredoxin superfamily protein (.1) Potri.010G136300 [exp] 62 / 5e-11 AT2G37240 62 / 8e-11 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Lus10014017 pacid=23156788 polypeptide=Lus10014017 locus=Lus10014017.g ID=Lus10014017.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCGTTGTCAGCGTCCTACTGTCCAAACACTATCATTCACCGTCAGCTCATTAGCTTCTCACCGCCACCGTCTTACCGCTCCGGCATCGGCC AGTCGGTCGGAGATTCACGCTCCGGCGCCGGGTTCAGAAAGCTAGAGTCTCTGCGATATCAGGATCCCCTGGCAAGGATTGAATCGTCCAGCTCAGTAAG TCAAGAGACGACGACGACGTCGAATTCACTGGACAGCGTGAAGGTGGTTGATCTCAATGGGAAAGAAATTCGAATTTCCGATTTGTGGAAAGATCGGAAA GCAGTCGTCGCTTTTGCTCGTCATTTTGGATGCGTTCTTTGCCGGAAACGAGCAGATTATCTCGCCGCTAAGAAGGATGTAATGGATGCAGCTGGAGTGA CTCTGGTTTTGATTGGACCGGGTAGTGTCGATCAGGCAAGAACTTTCTTTGAGCAAACTAAATTCCAAGGAGAAGTATACGCAGATCCAAACCACTCGGC GTATGAGGCTTTGAACTTTGTTTCTGGAGTTGCAACAACTTTTACTCCAAAGGCTGGTCTTAAGATTATGCAACTATACATGGAAGGTTACCGGCAAGAC TGGAAACTATCGTTTGAAAGCGACACAGTCAGTAGAGGAGGCTGGCGGCAAGGTGGCATTGTAGTTGCAGGCCCTGGGGAAACTAATATCTCATACATCC ACAGGGATAAAGAAGCTGGTGATGACCCAGATATTGAAGAAGTGCTCGGTGCTTGTTGCCGGTGA
AA sequence Show only first row Show all	>Lus10014017 pacid=23156788 polypeptide=Lus10014017 locus=Lus10014017.g ID=Lus10014017.BGIv1.0 annot-version=v1.0 MAVSLSASYCPNTIIHRQLISFSPPPSYRSGIGQSVGDSRSGAGFRKLESLRYQDPLARIESSSSVSQETTTTSNSLDSVKVVDLNGKEIRISDLWKDRK AVVAFARHFGCVLCRKRADYLAAKKDVMDAAGVTLVLIGPGSVDQARTFFEQTKFQGEVYADPNHSAYEALNFVSGVATTFTPKAGLKIMQLYMEGYRQD WKLSFESDTVSRGGWRQGGIVVAGPGETNISYIHRDKEAGDDPDIEEVLGACCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	0	1
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10028633 [exp]	1.0	0.9594
AT4G14615			unknown protein		Lus10006639 [exp]	2.0	0.9516
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	3.9	0.9459
AT3G61320			Bestrophin-like protein (.1)		Lus10030389 [exp]	5.2	0.9174
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	6.0	0.9330
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10022477 [exp]	6.9	0.9334
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	7.4	0.9394
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	7.7	0.9450
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10021923 [exp]	8.1	0.9360
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10035042 [exp]	8.1	0.9302

Compare expression of checked genes

Lus10014017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.