Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02810 386 / 1e-122 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G60100 220 / 7e-63 APRR3 pseudo-response regulator 3 (.1.2.3) AT2G46790 171 / 6e-46 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G24470 169 / 9e-44 APRR5 pseudo-response regulator 5 (.1) AT5G61380 106 / 1e-23 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT3G16857 92 / 5e-19 GARP ARR1 response regulator 1 (.1.2) AT4G16110 90 / 3e-18 GARP ARR2 response regulator 2 (.1) AT1G67710 89 / 5e-18 GARP ARR11 response regulator 11 (.1) AT2G25180 88 / 8e-18 GARP ARR12 response regulator 12 (.1) AT2G01760 83 / 1e-16 GARP ARR14 response regulator 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019899 [exp] 979 / 0 AT5G02810 347 / 4e-109 pseudo-response regulator 7 (.1) Lus10032934 [exp] 173 / 2e-45 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10015571 [exp] 172 / 6e-45 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10008879 [exp] 172 / 1e-44 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10023229 [exp] 160 / 6e-42 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10023230 [exp] 160 / 6e-41 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10008878 [exp] 160 / 9e-41 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10015720 [exp] 114 / 2e-26 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 113 / 6e-26 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046200 [exp] 386 / 4e-122 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.010G215200 [exp] 369 / 9e-116 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.015G002300 [exp] 176 / 4e-46 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 173 / 5e-45 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 169 / 9e-44 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.012G005900 [exp] 168 / 2e-43 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.015G061900 [exp] 112 / 1e-25 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.018G111300 [exp] 97 / 1e-20 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 97 / 2e-20 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G213500 [exp] 92 / 7e-19 AT4G16110 602 / 0.0 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10014018 pacid=23156809 polypeptide=Lus10014018 locus=Lus10014018.g ID=Lus10014018.BGIv1.0 annot-version=v1.0 ATGAAAGGTGATGGAGGCGGGGATGGAGGTGGTCCAGCTATAGAACTAAATAACCAGCTGTCCAATGTAGAAAAGATGGTAATTGAGGATGGAGTTGTGA GTAAGGACAAAAAATTAGTTGAAGTTGATGTGAGAGATCGTCTTGGAGGGGCTGTTCAGGTCGCACTTCCAATCCAACAGCAATCTCAAGGGACAACAGT TTGCTGGGAAAGGTTTCTTCATCTCAGAACCCTCAAGGTTCTGCTGGTGGAAAATGACGATTCAACCCGCTTTGTTGTCTCCGCTCTGCTGCGTAACTGC AGCTATGAAGTAATTGAAGCCTCAAATGGAGTACAAGCTTGGAAGATACTCGAGGACTTGGCCAATCATGTTGACATTGTCTTGACTGAAGTGGTCATGC CTTTTGTATCTGGCGTTGGGCTTTTGTGCAAGATTATGTCCCACAAAACGCGCAAGAATGTCCCTGTAATCATGATGTCTTCCCACGACTCAATGGGTTT GGTATTTAAGTGCCTGTCAAAGGGAGCTGTTGATTTTTTAGTCAAACCCATACGAAAGAATGAGCTTAAGATCCTTTGGCAGCATGTTTGGAGAAGATGC CATAGTTCTAGCGGCAGTGGAAGTGAAAGTGGCAGTGTAACTCAAACTCAAAAGTCAGTAAGATCAAAAAAGGTTGAGAAGTCCAACAATAACAGCAGCA GCAATGATGAGGATATTGATGGTAGCTTTGGTCCGAATGTTGGTGACGGAAGCGATGATGGGAGTGGTACACAGAGTTCTTGGACAAAGCAAGACGTCGA GGTGGAGAGCCCTCGTGCTTTGCCTCAATGGCAGCAAGTTTCTGATTGTCCTGATAGTACTTGTGCCCAAGTCATTAATTCAAATGGTGAAGTATCTGGT AACAAACAAGTTCATGCGTCTAAAGGAAAGGAACATCAAGAGGAGCAACGACTGGACATTTCCGCTATTGACAAAGATTTTGGAATTGGAGCACCACAGA AGCCTGACTTGCAACTCAACTTTGCAACTGGAGATCCAAAGAACCTTGCAGGGATCAGACAAAGTCATCTGCTTGAACAAGGGGGTCCCGGATTTGATGA GCACGAAGATAAGGGATTCATCAGTATAAATAGTGCAAATAATTTGCAAGGTGAAGCCGGAAGAGCAGTTGTATTCACTCTTAATGCTGCTGAATCATGT ATGGACAGTGCAAAAGTTAAGATCTCAGACTCCATAGTCAAGGCTAGTACTGACCCTAAGGGAGCATGCTTTGACGTATGTTTGAAGAGAGTTAGAGGAG CCAAGGATGTTAATAAGAGTAATCAGGACGAACGAAATGTTCTAAGGCGTTCGGACTTCTCAGCCTTCTCAAGGTATAATGCAGCTTCGAATTCAAACAA GATTTCTGGAGGAAACACTCAGAGTGGTCCTCCTGTTGTTACGAGTTTTGATGATGTCAGAAAGGGGGCATTCCATGATCGCCGCTCTAACTCAATTAAC AATACTCCTAGCCGTCGTTCAAATGTGGATTGCAACACTGTTGACATGGGCTCCACAACGAATAATACTTTTCTCAAGTCAGCGGTTCTGAAAAACAAAT CTGGAGTAACATCGATGGTCAGATACACTCACGCCCCATCTTCCAGCCAGCCTACAGAAGGCATTACGAAATCCATTTCTCCTCATCAAGTTGTCTCAGA AAAAGCTGACGATTTAGCAGCAACGGCTACTACACTGGTTCAACCAAGTGATGCCCACATGGAGCTCCCAAATCAGCACCATCATCCCCAACCAGCTAAG CATGATGATTCAGCATCAAAGAAGATGATGACACCACATAATGGATCATCCAATGCCCTAGGTGGTGGCCCTTTTGAAGGCAATGCTTGCAATTGCAGCA TCAATGGAAGTGCCTCGGGCAGCAATCATGGGAGTAACCATGGTAGTAATGGGAACAATGGGAGTAGCCCGGCAGTTCATGCTGGGGCAACTAACATGGA GAGTGATAATGGAGTTGCTGGGAAGAGTGGAAGTGGGGGTGCTGATGCGAGTGGGACCGGAGGAGGGAATGGGAGCGACAATGGCAGTGGTAGTGGCAGT GGAGACAAGCTAGATCCAGATAGGCTTTTACAAAGAGAAGCTGCTTTGGCCAAATTCCGACTGAAGAGGAAAGATCGATGCTTCAGGAAAAAGGTTAATG CTTTTTGCTTCATTTACTATTGTATCAATGTGGTTGCAAGAATGGATCAATGTGGTTGCAAGGATGGATCAATGTGGTTGCAAGGATGGATCAATGTGGT TGCAAGGTTGGATTGCAGGTCATTTCCACAGGCAAGGCCTCTGAGTATCTGTTTGTTTGTACTTTTGATGATGTTTCAGGTTCGGTACCAGAGCAGGAAG AAACTTGCCGAGCAGCGGCCACGTTTTCGGGGACAATTTGTGCGGAAAGACGGTAATGAAAGCAGTAGTCGAGCTACCGATAGCTAA
AA sequence Show only first row Show all	>Lus10014018 pacid=23156809 polypeptide=Lus10014018 locus=Lus10014018.g ID=Lus10014018.BGIv1.0 annot-version=v1.0 MKGDGGGDGGGPAIELNNQLSNVEKMVIEDGVVSKDKKLVEVDVRDRLGGAVQVALPIQQQSQGTTVCWERFLHLRTLKVLLVENDDSTRFVVSALLRNC SYEVIEASNGVQAWKILEDLANHVDIVLTEVVMPFVSGVGLLCKIMSHKTRKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRC HSSSGSGSESGSVTQTQKSVRSKKVEKSNNNSSSNDEDIDGSFGPNVGDGSDDGSGTQSSWTKQDVEVESPRALPQWQQVSDCPDSTCAQVINSNGEVSG NKQVHASKGKEHQEEQRLDISAIDKDFGIGAPQKPDLQLNFATGDPKNLAGIRQSHLLEQGGPGFDEHEDKGFISINSANNLQGEAGRAVVFTLNAAESC MDSAKVKISDSIVKASTDPKGACFDVCLKRVRGAKDVNKSNQDERNVLRRSDFSAFSRYNAASNSNKISGGNTQSGPPVVTSFDDVRKGAFHDRRSNSIN NTPSRRSNVDCNTVDMGSTTNNTFLKSAVLKNKSGVTSMVRYTHAPSSSQPTEGITKSISPHQVVSEKADDLAATATTLVQPSDAHMELPNQHHHPQPAK HDDSASKKMMTPHNGSSNALGGGPFEGNACNCSINGSASGSNHGSNHGSNGNNGSSPAVHAGATNMESDNGVAGKSGSGGADASGTGGGNGSDNGSGSGS GDKLDPDRLLQREAALAKFRLKRKDRCFRKKVNAFCFIYYCINVVARMDQCGCKDGSMWLQGWINVVARLDCRSFPQARPLSICLFVLLMMFQVRYQSRK KLAEQRPRFRGQFVRKDGNESSSRATDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	0	1
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	1.4	0.7696
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	3.0	0.7449
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	7.2	0.7397
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	9.2	0.7260
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10017024 [exp]	10.5	0.6457
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	11.0	0.7108
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	12.2	0.7324
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	15.4	0.7655
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10015215 [exp]	18.0	0.6162
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10007763 [exp]	18.4	0.6766

Compare expression of checked genes

Lus10014018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.