Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02800 509 / 1e-180 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 484 / 7e-169 Protein kinase superfamily protein (.1.2) AT5G13160 473 / 6e-165 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT2G28590 461 / 8e-161 Protein kinase superfamily protein (.1) AT1G07870 449 / 2e-156 Protein kinase superfamily protein (.1.2) AT3G20530 445 / 3e-155 Protein kinase superfamily protein (.1) AT3G24790 437 / 1e-152 Protein kinase superfamily protein (.1) AT3G07070 424 / 2e-146 Protein kinase superfamily protein (.1) AT4G13190 418 / 2e-144 Protein kinase superfamily protein (.1) AT1G20650 414 / 6e-143 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019897 [exp] 676 / 0 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 512 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 509 / 2e-180 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 509 / 4e-180 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 503 / 1e-177 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 493 / 4e-172 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 493 / 5e-172 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 471 / 3e-164 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 440 / 1e-152 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133300 [exp] 520 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 515 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 510 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 491 / 2e-171 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 491 / 3e-171 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 478 / 3e-167 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 471 / 2e-164 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 461 / 3e-161 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 454 / 1e-158 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 441 / 1e-153 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10014019 pacid=23156847 polypeptide=Lus10014019 locus=Lus10014019.g ID=Lus10014019.BGIv1.0 annot-version=v1.0 ATGGAGATGAAGGAAACAGAAAAAGTAGTGATAGCAAAACCAGTACCTTCTAGGCCTACTAGCTCCACTTTTGGCTCTTCAATAATCCTCCCCTTGCAGC CTAATTCCCAGGATGAAGGTTCTCCTCCCACCAACATCATTTACAAGCCACAGGCAAAGCTTGTCTCCAAGAGGACTGCTTCCCTCCTTGCAAATATGCG GAGAATGAAATTCGAATTCCAGAGGGGTGTACTTGAAGCTGGGTTGGATAATTACCGGCTCATCCAAACCGGGTTGGTGGTGTGGACTGGTTTGACTGCG ACCATTTTCGTTTCAGGGTTTGGTGAAAGGTCGAGGAAAGATAGGAAATTAGAGTCCAAGGTAAACTCGGATGACATTGCAGCAAAGACCTTCACATTCC GGGAACTGACCATAGCAACTAACAACTTCAAAAAGCAATGCCTTCTTGGTGAAGGAGGCTTTGGAAGGGTTTACAAAGGCTATTTAGAAAGCATTAACCA GGTTGTGGCAATCAAGCAACTTGACAGGAATGGCTTGCAAGGGAATAGAGAATTCCTAGTTGAGGTCCTGATGTTGAGCCTACTTCATCACCAAAACCTC GTGAATTTGACTGGATACTGTGCCGATGGAGATCAAAGGCTTCTGGTTTACGAATACATGCCTCTAGGATCTCTGGATGACCACATCCATGATATTGAGC TTGGAGGAAAGAAAGGCCTCGATTGGAACACGAGAATGAGTATCGCGGCAGGAGCAGCAAGGGGGTTGGAGTTCTTGCATGACAAGGCAAAGCCTCCTGT GATATACAGGGATCTTAAATGCTCAAACATTTTACTAGACAAAGGATACCATCCGAAACTATCCGATTTCGGACTGGCGAAACTCGGCCCCGTTGGAGAC AACACTCATGTATCCACGAGAGTCATGGGGACTTACGGTTATTGTGCTCCTGAATACGCGATGACCGGCCAACTAACCTTGAAGTCTGATGTTTATAGCT TTGGTGTTGTCCTCCTGGAGATCATTACGGGAAGGAGGGCTTACGATACCTCCAAGTCGGTAGGAGAGCAGAATCTTGTTGCTTGGGCTAAACCTTTGTT CAACGATCGGAGAAACTTCGCGAAAATGGCTGATCCAATGCTGAGAGGAGAGTTTCCTGCAAGGGCTCTATACCAAGCTCTTGCTGTGGCAGCAATGTGC GTTCAGGAACAGCCTAACATGAGACCTGCTATGGCTGATGTTGTCACGGCTTTGTCTCACCTTGCTTCACAGAAGAGTGCAACTGAGACGCAGCAGTCGC TTCAGATGTCGCGCTTGGCTGCAGAAACCTCACCTAGTGCCAAGGCTCGAAGTTGA
AA sequence Show only first row Show all	>Lus10014019 pacid=23156847 polypeptide=Lus10014019 locus=Lus10014019.g ID=Lus10014019.BGIv1.0 annot-version=v1.0 MEMKETEKVVIAKPVPSRPTSSTFGSSIILPLQPNSQDEGSPPTNIIYKPQAKLVSKRTASLLANMRRMKFEFQRGVLEAGLDNYRLIQTGLVVWTGLTA TIFVSGFGERSRKDRKLESKVNSDDIAAKTFTFRELTIATNNFKKQCLLGEGGFGRVYKGYLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHQNL VNLTGYCADGDQRLLVYEYMPLGSLDDHIHDIELGGKKGLDWNTRMSIAAGAARGLEFLHDKAKPPVIYRDLKCSNILLDKGYHPKLSDFGLAKLGPVGD NTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRRAYDTSKSVGEQNLVAWAKPLFNDRRNFAKMADPMLRGEFPARALYQALAVAAMC VQEQPNMRPAMADVVTALSHLASQKSATETQQSLQMSRLAAETSPSAKARS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10014019 [exp]	0	1
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	2.4	0.8301
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	3.6	0.8526
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10011389 [exp]	5.7	0.8171
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031833 [exp]	5.9	0.8214
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	7.5	0.8268
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	8.0	0.8247
AT4G38810			Calcium-binding EF-hand family...		Lus10012178 [exp]	10.7	0.7990
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	11.2	0.8210
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	12.4	0.7961
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10009467 [exp]	13.3	0.8039

Compare expression of checked genes

Lus10014019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.