Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37290 776 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G55020 686 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 625 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 182 / 5e-50 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 112 / 2e-26 PAM1 plant adhesion molecule 1 (.1) AT3G02460 104 / 6e-24 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 65 / 1e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 56 / 1e-07 RabGAP/TBC domain-containing protein (.1.2) AT5G24390 55 / 2e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 51 / 3e-06 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041425 [exp] 681 / 0 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10040349 [exp] 668 / 0 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 652 / 0 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10036500 [exp] 547 / 0 AT3G55020 608 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10012363 [exp] 187 / 1e-51 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 186 / 3e-51 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10003047 [exp] 108 / 3e-25 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 106 / 2e-24 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10008148 [exp] 66 / 8e-11 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133400 [exp] 887 / 0 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.010G215000 [exp] 744 / 0 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.008G046600 [exp] 738 / 0 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.002G218100 [exp] 181 / 1e-49 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.014G163400 [exp] 180 / 2e-49 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.004G106700 [exp] 107 / 7e-25 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 105 / 3e-24 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.007G134200 [exp] 70 / 4e-12 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G131300 [exp] 66 / 7e-11 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.006G069300 [exp] 64 / 2e-10 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10014020 pacid=23156794 polypeptide=Lus10014020 locus=Lus10014020.g ID=Lus10014020.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGAACGGCGTCAACCTCCCCCAATCTCTCCATCACGGAAGAAGGGATTCTTATGGATTTGTGTTGAGACCTCAACACGTACAACGGTACA GAGAATACATCCATATCTACAAGGAGGAGGAGGAGGAAAGATCAATTAAATGGAAGCTCTTCCTTGAACAACAAGAGAACTTGGACGAATCTGAAGAAGC AAACGAGGAAAACAGGTTGCAGGTTGAAGGCACTGCTCAATCTGGAGAAGAGGCTGCTAGTTCAGAGTTAAAAAGAAGGGACGATGGGGATGATGTGAGT GTGAGCTGTCCTAGTTCTGAAACGTCAAAGGAGCACCAACTCTTGGAGGAATCAACCCAAGGGACTCATCGTTCGGTAGAAGGTGAAAAACTGGTTGAGG GACCTCAGCAGGAGGTGCAATTTGCAGAGGAACTTGGAAAGGAGAAGGGGCCGTGTGTCGAGGAACCGGAAAAGAAGTTTCAAGCGTTAAAAAGAAGGGA TGGTGGGGACGATGTGAGTGTAAGCTGTCCTAGTTCTGAAACCTCAAAGGAGCACCAACTCTTGGAGGAATCAATCCAAGGGACTCGTTGTTTGGAAGAA GGTGAAAAAGTGGTTGAGGGACCTTGGCAGGAGGTGCAAGTTGTAGAGGAACCTGGAAAGGAAGAGTGGCCATGTGTGGAGGAACATCAAAAGAAGGTTC AAGCGACAAAGGATAAGCAGTCAGAGCTGCCTAAAGAAGAGGTACAATCCTTGGAAGTACCATCGAAACCACCGGAAGGGTTGCATGTTTCAGAGGAAGG TGTAAAGGAGGATCGTTCAAAAACTTCGAAGGCTGGTAGAGTCCCAAATTGGGGTCAAATTAGACCATCCCTGAAGGTTATAGAGAGAATAATGAGCGAA CGTGTTCAGAAAAAACATAATGTGAAAGTCAATAAGAAGACTAGGAGTAGAGACCATCTTCCAGTGATAGAAGAAGATGGTTCATCAGAAGGAGAACCAG ATGATGATGTTGTCAAGGAGGAAAGTTTTAAGGAGACTTTGGATGAAAAAGATAATGAGAGCACAGATGAAAGAATTGTAGAAAATGGGCCTTCTTCTGA ACCATTCTTTCTCTGGAAACAGGAACTCGAGTTCCTTGTCAATGGAGGAGTGCCAAAAGATCTCAGGGGAGAGGTATGGCAGGCCTTTGTTGGTGCGAAG ACACGCAGGGTTGACAAATATTATGAGGGGTTACTTGCAGAAGATGCTAATGCTGATGATAGCAATGATGATAACAGCACAGGCATACCCACACAGTGGA GAAAGCAGATTGAGAAGGATATACCGAGAACGTTTCCTGGTCATCCAGCATTGGATGAGCATGGCAGGGACTCATTAAGGCGGCTTCTTATAGCATATGC CCGGCATAACCCTTCTGTTGGATACTGCCAGGCCATGAATTTTTTTGCTGGCTTGTTGCTACTCCTGATGCCAGAAGAGAATGCTTTTTGGACTTTTGTG GGAATTATTGATGACTATTTCGATGGCTACTATACTGAAGAAATGATTGAATCACAGGTCGACCAGCTGGTCTTTGAAGAGTTAATGCATGAAATTTTCC CTAGACTGGTTAGTCATCTGGAATTCTTGGGAGTGCAGGTTGCATGGGTATCTGGACCTTGGTTCCTTTCTATTTTTATAAATATGCTTCCCTGGGAAAG CGTTCTGCGAATCTGGGACGTTTTATTGTTTGAGGGAAATCGTGTAATGCTGTTTCGGACAGCATTTGCTCTGATGGAGCTATATGGTCCTGCATTACTT ACTACTAGAGATGCTGGGGATGCAATTACTTTATTACAGTCCCTAGCAGGATCAACATTTGACAGCAGCCAGCTTGTGTTGACTGCCTGTGTTGGATTTT TGTCTGTAACTGAATCTAGATTGAAAGAGTTGAGAGAAAAACACAGAGCATCAGTACTGGAAGTAGTCGAGGAAAGATCAAAACAGGGTAACGTATGGAA GGATTCAAAAGGTCTTGCAAAGAAGTTGTATAGTTTCAAGCATGATGCTGGCCGTGATGATAGGAACGGTGTAGGCAACAATTCTCAGTCAGGAACTGGC TCCCCTTTTGATGATTTTCTATGCGGATTGTCTGCCGACTCAGAACTGGATTCTTTGCCAGATCTTCAAGATCAGATAGTTTGGCTGAAGGTGGAGCTGT GCAGATTACTGGAGGAGAAGCGATCTGCCATACTCAGAGCTGAGGAGCTGGAGACAGCACTTATGGAGATCGTCAAACTAGACAATCGGCGGCAATTGAG TGCAAAGATTGAGAAGCTAGAGCACGAGATATATGGTCTACGACGATCCCTTGCTGAAAAGAAAGAGCAAGAAGCTGCTATGCTTCAGGTATTGATGCGT GTTGAGCAAGAACAGAAGATAACAGAAGAAGCCAGGGTGATTGCTGAGAAAGAAGCAGCTGCTCAGAGACTTGAAGTCAGCTCCCTTCAGGAGAAGTATG ATAAGGCAATGTCGCTAATAGCTCAAATGGAGAAGAGGGTGGTGATGGCAGAGTCGATGTTGGACGCTACGATGCAGTACCAATCTGGCCAAACTAAAGC ACAGTGCGAACCTCCAGGGGGTCTCCAGCAGCAGAACGCGGCAGGGGAAAGCCCCAGTAGAGGGATGGGTATTCTGACATTTGGCCTTGGCTGGCGTGAC AAAGGCAAGGAAAGACGATTTCATTCGTTTAAAAGTGAGTTACAGTACAGGATTAGAAAGCAAGACATCAACCCATTCAAGAGATGGGATCCAGTCTTGA CTAATCGCATGAGCACGGGTTTAAGTGGCCACCCAATCCGCTAA
AA sequence Show only first row Show all	>Lus10014020 pacid=23156794 polypeptide=Lus10014020 locus=Lus10014020.g ID=Lus10014020.BGIv1.0 annot-version=v1.0 MAAENGVNLPQSLHHGRRDSYGFVLRPQHVQRYREYIHIYKEEEEERSIKWKLFLEQQENLDESEEANEENRLQVEGTAQSGEEAASSELKRRDDGDDVS VSCPSSETSKEHQLLEESTQGTHRSVEGEKLVEGPQQEVQFAEELGKEKGPCVEEPEKKFQALKRRDGGDDVSVSCPSSETSKEHQLLEESIQGTRCLEE GEKVVEGPWQEVQVVEEPGKEEWPCVEEHQKKVQATKDKQSELPKEEVQSLEVPSKPPEGLHVSEEGVKEDRSKTSKAGRVPNWGQIRPSLKVIERIMSE RVQKKHNVKVNKKTRSRDHLPVIEEDGSSEGEPDDDVVKEESFKETLDEKDNESTDERIVENGPSSEPFFLWKQELEFLVNGGVPKDLRGEVWQAFVGAK TRRVDKYYEGLLAEDANADDSNDDNSTGIPTQWRKQIEKDIPRTFPGHPALDEHGRDSLRRLLIAYARHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFV GIIDDYFDGYYTEEMIESQVDQLVFEELMHEIFPRLVSHLEFLGVQVAWVSGPWFLSIFINMLPWESVLRIWDVLLFEGNRVMLFRTAFALMELYGPALL TTRDAGDAITLLQSLAGSTFDSSQLVLTACVGFLSVTESRLKELREKHRASVLEVVEERSKQGNVWKDSKGLAKKLYSFKHDAGRDDRNGVGNNSQSGTG SPFDDFLCGLSADSELDSLPDLQDQIVWLKVELCRLLEEKRSAILRAEELETALMEIVKLDNRRQLSAKIEKLEHEIYGLRRSLAEKKEQEAAMLQVLMR VEQEQKITEEARVIAEKEAAAQRLEVSSLQEKYDKAMSLIAQMEKRVVMAESMLDATMQYQSGQTKAQCEPPGGLQQQNAAGESPSRGMGILTFGLGWRD KGKERRFHSFKSELQYRIRKQDINPFKRWDPVLTNRMSTGLSGHPIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	0	1
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10036237 [exp]	2.0	0.8030
AT3G14890			phosphoesterase (.1.2)		Lus10038650 [exp]	4.5	0.7651
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	4.6	0.8097
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	6.3	0.7979
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	10.7	0.7966
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	11.5	0.7895
AT1G02270			Calcium-binding endonuclease/e...		Lus10005145 [exp]	14.4	0.7248
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	17.5	0.7674
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10039919 [exp]	22.0	0.6636
AT1G27170			transmembrane receptors;ATP bi...		Lus10015453 [exp]	23.5	0.7362

Compare expression of checked genes

Lus10014020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.