Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 202 / 9e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 188 / 1e-60 Protein of unknown function (DUF567) (.1) AT2G14560 171 / 1e-53 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 158 / 2e-48 Protein of unknown function (DUF567) (.1) AT3G16900 144 / 2e-43 Protein of unknown function (DUF567) (.1) AT3G15810 94 / 2e-23 Protein of unknown function (DUF567) (.1) AT3G56180 88 / 2e-21 Protein of unknown function (DUF567) (.1) AT3G10986 80 / 2e-18 Protein of unknown function (DUF567) (.1) AT1G80120 69 / 4e-14 Protein of unknown function (DUF567) (.1) AT2G38640 61 / 3e-11 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002477 [exp] 396 / 2e-142 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 396 / 2e-142 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 377 / 3e-135 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 278 / 1e-95 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 276 / 8e-95 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 268 / 1e-91 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 246 / 3e-83 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 238 / 3e-80 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 238 / 4e-80 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G131850 [exp] 299 / 4e-104 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 299 / 5e-104 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 296 / 7e-103 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 265 / 9e-91 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 254 / 2e-86 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 223 / 5e-74 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 219 / 1e-72 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 214 / 2e-70 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 210 / 3e-69 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 196 / 1e-63 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10014021 pacid=23156853 polypeptide=Lus10014021 locus=Lus10014021.g ID=Lus10014021.BGIv1.0 annot-version=v1.0 ATGGCCACCGGTCAACCCAGCAACCCGATCCCGGCGATGACGGTGTATCTTCCCCTGGAGCAGCCAGTGGTAGTGGTCGGCCCTTACTTTCTGGCTCAAT ACCCTGTCGATCTAACAGTGGCGACCAAGCTGATGACCCTCGGAGAAAATGATTTCACCGTCAATGACGTCAACGGGACCGTCATCTTCAGAGTCAAGAG CAAGCTCATGAGCCTGCACGATCGCCGGAAGTTGATGGATGCCTCCAACAACGTGCTAGTCTCCATGTCACAGAAACTAATGTCGGCGCACAGAAGATGG CAGGCGTTTCGCGGGAACAGCAACGAGTTGCTGTTCACTGTGAGGAAATCGTCGGTGATGCAGCTGATGAAGACCGAGTTGTGCGTGTTCTTGGCTGGGA ACACCAAGGAAGAAGTCCCTGATTTCAGGGTCAAGGGCAGCTTCCACCAGAGTTCATGCGTTATTTATCTAGGCAACACCAACAAGATCATTGCTCAGAT GTACAGAGGACATAGCATGGCAACGATGTTGTTTGAGACGGACAATTTCAGGGTGACCATCTACCCCAATGTTGATTACGCCTTCATCGTCTCTCTTGTG GTGATCCTTGACGAGATCAACGCTGACCGCAGTGGTGAAGACTAA
AA sequence Show only first row Show all	>Lus10014021 pacid=23156853 polypeptide=Lus10014021 locus=Lus10014021.g ID=Lus10014021.BGIv1.0 annot-version=v1.0 MATGQPSNPIPAMTVYLPLEQPVVVVGPYFLAQYPVDLTVATKLMTLGENDFTVNDVNGTVIFRVKSKLMSLHDRRKLMDASNNVLVSMSQKLMSAHRRW QAFRGNSNELLFTVRKSSVMQLMKTELCVFLAGNTKEEVPDFRVKGSFHQSSCVIYLGNTNKIIAQMYRGHSMATMLFETDNFRVTIYPNVDYAFIVSLV VILDEINADRSGED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10014021 [exp]	0	1
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10026286 [exp]	1.4	0.8210
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	4.9	0.7492
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	25.3	0.7111
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10042180 [exp]	32.3	0.6577
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	39.5	0.6921
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	41.2	0.6583
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	41.8	0.6915
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10021294 [exp]	57.5	0.6559
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10028899 [exp]	61.8	0.6540
					Lus10015383 [exp]	64.0	0.6570

Compare expression of checked genes

Lus10014021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.