Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12130 397 / 5e-135 ATTERC, PDE149 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) AT5G02780 61 / 3e-10 GSTL1 glutathione transferase lambda 1 (.1.2) AT3G55040 57 / 9e-09 GSTL2 glutathione transferase lambda 2 (.1) AT5G02790 54 / 5e-08 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019895 [exp] 764 / 0 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10015049 [exp] 67 / 3e-12 AT5G02790 322 / 3e-112 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10003994 [exp] 59 / 3e-09 AT5G02790 324 / 5e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10040347 [exp] 57 / 1e-08 AT3G55040 290 / 8e-98 glutathione transferase lambda 2 (.1) Lus10023589 [exp] 0 / 1 ND 51 / 1e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133900 [exp] 447 / 8e-155 AT5G12130 472 / 5e-167 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Potri.016G083500 [exp] 72 / 6e-14 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.006G133500 [exp] 66 / 8e-12 AT5G02790 325 / 1e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.008G046800 [exp] 59 / 4e-09 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF03741 [flax] [poplar] TerC Integral membrane protein TerC family
Representative CDS sequence Show only first row Show all	>Lus10014022 pacid=23156810 polypeptide=Lus10014022 locus=Lus10014022.g ID=Lus10014022.BGIv1.0 annot-version=v1.0 ATGGTTTTCAATCTCCACCTCAAAGCCGCAACTCCACGGGGAGTTCTGGGGCTGGCTTCCGCAATCCACGACGACATTCGAGCTCCTCCCATTAACTTCA ATCCCTTCTCGCTCAGGCTTTCAACTGATCCTAAATGTATTAGGGTTCAGCTCGTTCAGCCCCAATTCCCTTCCGTTTCCGCAGCCGCTAATGGAGGCCG CCGGCGGGTTTGTCAGGTTGCTGGTGCAAGGGGCACTGAGAAGGAAGGAGATTTATCCAACTCCGAAGCTGAGAAGATCAGTTCTGAAAGACATGATGAT GCGTTGGATAAAGCCGAGGGAGATAAATCGTATGTGACATCAGTTAAAACCGTTGCTCTATGTGTTGGCAGTGCGGTAGCATTTGGAATTGGCATTGGTC TGAAAGAAGGAGTTGGCAAGGCATCGGAGTTCTTTGCTGGGTACCTCTTGGAGCAAAGTTTGTCTGTTGATAATCTATTCGTCTTTGTTCTGATTTTTAA CTATTTTAAAGTACCACTCAAGTATCAGAATCGAGTGCTTTCGTATGGTATTGCTGGCGCAATCATCTTTCGTTTGTCGTTGATACTTCTTGGAACGGTC ACTCTTCAGAGATTTGAGGCAGTCAACCTACTCCTGGCAGGAATATTGCTATACTCATCTTTCAAGTTACTATTTGTTAGTGAAGAAGATGACACTGATC TATCCGACAAGTTTATTGTGAAGATTTGCCAGAGATTTATTCCGGTCACATCTAAATATGACGGGGATCGATTTATAACAATGCACGAGGGCATCAACCA TTTTGGGCAGGCCACACCCTTACTTCTCACAGTAGCTGTACTTGAGCTCAGCGATATTGCATTTGCTGTCGACTCCATACCTGCTGTTTTTGGTGTTACA CGAGATCCGTTCATTGTTATCTCTTCCAACCTTTTTGCAATACTAGGTCTGAGGTCGTTTTTCACGCTCATCTCCCAGAGTATGTCAGAGTTGGAGTATT TGCAACCGTCGATTGCTATCGTCCTAGGCTTCATTGGATGCAAGATGATACTCGAGTTCTTCGGTGAGTTATCATCTAATCCATCATCACTGTCTATCGT TCTATCTTATGCTTTGAACTTCCGTTCTCGGCCAAAACATCAATTGTTTTACCGTTGCGTGTTGGTTGGAAGTTCGTATATATCCAACGCCAGAGAGACA CTACCTCCGTCGCTGGATTCCGCCAGCCACGCGCCGCCTCCCTTTAACGGAACCGCCACCGCCAGATTGTACGCGAGTTACAGAAGTCCATTTGCTCAGC GCGCCTGGATTGGCAGGAATTGCAAGGATGGTGAAAGGAAAAGTTTTGCTGAGGAATTGCTGTCATACTCCGATGACTTCACCGAGATGATTCTCAACTC TTTTAAAGGAGAAACAGTAGCTTACATTCCATTCGTTGAAAGAGCAGAGATATTCCTGCCTGCAGCTTGGAACTACGATATCACTGGTGGACGGCCACAA CTTGCTGCTTGGATTCAGGACATGAAGAGGGTTGATGGGAAACCAAGAGCGATTCCAGAGAGGTGGTGGGCTTCTACAAGAAGCGCTTCTTGGTATTATT ATTTATTACTGTCTGTGCCTGATGATTCTGTTTATGGTTTACAATTTGCTTAG
AA sequence Show only first row Show all	>Lus10014022 pacid=23156810 polypeptide=Lus10014022 locus=Lus10014022.g ID=Lus10014022.BGIv1.0 annot-version=v1.0 MVFNLHLKAATPRGVLGLASAIHDDIRAPPINFNPFSLRLSTDPKCIRVQLVQPQFPSVSAAANGGRRRVCQVAGARGTEKEGDLSNSEAEKISSERHDD ALDKAEGDKSYVTSVKTVALCVGSAVAFGIGIGLKEGVGKASEFFAGYLLEQSLSVDNLFVFVLIFNYFKVPLKYQNRVLSYGIAGAIIFRLSLILLGTV TLQRFEAVNLLLAGILLYSSFKLLFVSEEDDTDLSDKFIVKICQRFIPVTSKYDGDRFITMHEGINHFGQATPLLLTVAVLELSDIAFAVDSIPAVFGVT RDPFIVISSNLFAILGLRSFFTLISQSMSELEYLQPSIAIVLGFIGCKMILEFFGELSSNPSSLSIVLSYALNFRSRPKHQLFYRCVLVGSSYISNARET LPPSLDSASHAPPPFNGTATARLYASYRSPFAQRAWIGRNCKDGERKSFAEELLSYSDDFTEMILNSFKGETVAYIPFVERAEIFLPAAWNYDITGGRPQ LAAWIQDMKRVDGKPRAIPERWWASTRSASWYYYLLLSVPDDSVYGLQFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	0	1
AT2G23390			unknown protein		Lus10038137 [exp]	2.4	0.9210
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	2.6	0.9043
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	3.2	0.9321
AT5G09820			Plastid-lipid associated prote...		Lus10020860 [exp]	3.5	0.9230
AT5G56850			unknown protein		Lus10008560 [exp]	8.1	0.9114
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10019895 [exp]	8.4	0.8894
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	11.5	0.9048
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	12.3	0.8825
					Lus10030090 [exp]	13.1	0.9175
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	13.4	0.8650

Compare expression of checked genes

Lus10014022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.