Plant FIBer expression Database

Lus10014023 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02770 96 / 1e-24 MOS11 modifier of snc1, 11, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019894
[exp]
243 / 2e-82 AT5G02770 142 / 2e-42 modifier of snc1, 11, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G134000
[exp]
90 / 3e-22 AT5G02770 114 / 1e-31 modifier of snc1, 11, unknown protein
Potri.016G082900
[exp]
84 / 4e-20 AT5G02770 119 / 2e-33 modifier of snc1, 11, unknown protein
PFAM info
Representative CDS sequence
>Lus10014023 pacid=23156795 polypeptide=Lus10014023 locus=Lus10014023.g ID=Lus10014023.BGIv1.0 annot-version=v1.0
ATGGCAAACGAAACCGATCTACCAATCGCCGTCGCCGTTACCAACGGTGGTTCTGAAGCTACCCTTGTCAAAGAACCTTCTTCCACGAAGCCTATTGGAG
GAGTCGTACCACCGTCCGACGATGTTTTAGGTAAGGAATATGGGGAGGATAAGGGCGGGTTGGATTCGGCGAGCAAGACTGCCGCCTCTGTGTCGGAAAG
TACCGACTCCGTCACGGACACGGAGAAGAAAATCCGACGAGCTGAGCGATTTGGAATTTCTGTGAAGTTGTCTGAGGAAGAGAAGCGCAGCTCTCGTATT
GAAAGGTTTGGTACTCCATCGGTGAAGCAAGGTTCTGCTGGACCGAAGAATTCAGAGGAGTTGAAAAGGAAGTCTAGGGCAGAGAGATTTGGGCTGCCTG
TACCAGCTGAACCAACTGCACCAACTGATGCTGAAGCAAAGAAGAAAGCTCGGCTGGAGAGATTTGGATCGATACCCAAACCCAATGCAGTTGAAGAAGA
CAAGAAGAAAGCCAGGGCTCTCAGGTTTGCACAACCTTCTTCAACTTCAATCACCGGAGAGGGTGATGTTCAGCCAAAGGAAGCAATCGCTTGA
AA sequence
>Lus10014023 pacid=23156795 polypeptide=Lus10014023 locus=Lus10014023.g ID=Lus10014023.BGIv1.0 annot-version=v1.0
MANETDLPIAVAVTNGGSEATLVKEPSSTKPIGGVVPPSDDVLGKEYGEDKGGLDSASKTAASVSESTDSVTDTEKKIRRAERFGISVKLSEEEKRSSRI
ERFGTPSVKQGSAGPKNSEELKRKSRAERFGLPVPAEPTAPTDAEAKKKARLERFGSIPKPNAVEEDKKKARALRFAQPSSTSITGEGDVQPKEAIA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02770 MOS11 modifier of snc1, 11, unknown ... Lus10014023
[exp]
0 1
AT1G63700 EMB71, MAPKKK4,... YODA, MAP KINASE KINASE KINASE... Lus10024645
[exp]
6.7 0.7338
AT1G01790 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFF... Lus10017823
[exp]
7.9 0.7456
AT1G71210 Pentatricopeptide repeat (PPR)... Lus10008998
[exp]
9.4 0.7459
AT5G38600 Proline-rich spliceosome-assoc... Lus10003067
[exp]
13.0 0.6765
AT2G39580 unknown protein Lus10029459
[exp]
13.1 0.7130
AT5G42400 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7... Lus10025172
[exp]
14.3 0.7264
AT5G36930 Disease resistance protein (TI... Lus10005373
[exp]
17.3 0.6759
AT1G70610 ABCB26, ATTAP1 ATP-binding cassette B26, tran... Lus10022270
[exp]
29.3 0.7332
AT4G09680 ATCTC1 conserved telomere maintenance... Lus10032880
[exp]
30.4 0.6989
AT5G56730 Insulinase (Peptidase family M... Lus10012918
[exp]
32.9 0.7263

Lus10014023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.